View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19338_high_7 (Length: 297)
Name: NF19338_high_7
Description: NF19338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19338_high_7 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 52624205 - 52623929
Alignment:
| Q |
18 |
atacaggtctatgtctcggtcttggaatgggtgcaacaaaggtgaagaagcagaaattggtgagtaaacctatgattgcaccttgttttgacctagcttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
52624205 |
atacaggtctatgtctcggtcttggaatgggtgcaacgaaggtgaagaagcagaaattggtgaataaacctgtgattgcaccttgttttgacctagcttt |
52624106 |
T |
|
| Q |
118 |
tgagctttgtccaaaaggagaacctatgaacgtacacaacaacaacaagggtgaaagaatcaatttggagagacaccaattgtatcaaaatgtaacgtgt |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52624105 |
tgagctttgttcaaaaggagaacctatgaacgtacacaacaacaacaagggtgaaagaatcaatttggagagacaccaatattatcaaaatgtaacgtgt |
52624006 |
T |
|
| Q |
218 |
agcactgattctgataacaacaataataacaacgatcgtagaaagaaactgaggctaacaaaggagcaatcatccatgct |
297 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52624005 |
agcactgattctgataacaaca---ataacaacgatcgtagaaagaaactgaggctaacaaaggagcaatcatccatgct |
52623929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 40039349 - 40039619
Alignment:
| Q |
18 |
atacaggtctatgtctcggtcttggaatgggtgcaacaaaggtgaagaagcagaaattggtgagtaaacctatgattgcaccttgttttgacctagcttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
40039349 |
atacaggtctatgtctcggtcttggaatgggtgcaacaaaggagaagaagcagaaattagtgaataaacctgtgattgcaccttgtttagacctagcttt |
40039448 |
T |
|
| Q |
118 |
tgagctttgtccaaaaggagaacctatgaacgtacacaacaacaacaagggtgaaagaatcaatttggagagacaccaattgtatcaaaatgtaacgtgt |
217 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
40039449 |
tgagctttgtccaaaagaagaagctatgaacgtacacaacaacaagaagggtgaaagattcaatttggagagacaccaacattatcaaaatgtaaagtgt |
40039548 |
T |
|
| Q |
218 |
agcactgattctgataacaacaataataacaacgatcgtagaaagaaactgaggctaacaaaggagcaatcatc |
291 |
Q |
| |
|
||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40039549 |
agccctgattctgataacaac---aacaacaacgatcgtagaaaaaaactgaggctaacaaaggagcaatcatc |
40039619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University