View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19338_high_9 (Length: 230)
Name: NF19338_high_9
Description: NF19338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19338_high_9 |
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| [»] chr3 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 107689 - 107918
Alignment:
| Q |
1 |
ggttttgttccaatgtcggcaaagtgtgtgccatgccaatgccatgattaatcatgtaataaattatgctatcatgctctttgaattctttctatttcct |
100 |
Q |
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| T |
107689 |
ggttttgttccaatgtcggcaaagtgtgtgccatgccaatgccatgattaatcatgtaataaattatgctatcatgctctttgaattctttctatatcct |
107788 |
T |
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| Q |
101 |
attgactgtttcagctgtggtatgcggtttcgaaaacattggctgaagaagctgcatggaaatttgttaaagaaaacaacattgatatggttactattaa |
200 |
Q |
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| T |
107789 |
attgactgtttcagctgtggtatgcggtttcgaaaacattggctgaagaagctgcatggaaatttgttaaagaaaacaacattgatatggttactattaa |
107888 |
T |
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| Q |
201 |
cccagcaatggtcatagggcctctcttgca |
230 |
Q |
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| T |
107889 |
cccagcaatggtcatagggcctctcttgca |
107918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 43 - 230
Target Start/End: Original strand, 88236 - 88423
Alignment:
| Q |
43 |
catgattaatcatgtaataaattatgctatcatgctctttgaattctttctatttcctattgactgtttcagctgtggtatgcggtttcgaaaacattgg |
142 |
Q |
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| T |
88236 |
catgattaatcatgtaatgaattatgctatcatgttctttgacttcttcctatttcctattcattgtttcagctgtggtatgtggtttcaaagacattgg |
88335 |
T |
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| Q |
143 |
ctgaagaagctgcatggaaatttgttaaagaaaacaacattgatatggttactattaacccagcaatggtcatagggcctctcttgca |
230 |
Q |
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| T |
88336 |
ctgaagaagctgcctggaaatttgttaaagaaaacaacatcgatatggttactattaacccagcaatggtcatagggcctctcttgca |
88423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 2707486 - 2707644
Alignment:
| Q |
74 |
atgctctttgaattctttctatttcctattgactgtttcagctgtggtatgcggtttcgaaaacattggctgaagaagctgcatggaaatttgttaaaga |
173 |
Q |
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| T |
2707486 |
atgctctttgactt-tttctatttcctattgatgctttcagctgtggtatgtggttttaaagaaattggctgaagattctgcatggaaatttgttagaga |
2707584 |
T |
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| Q |
174 |
aaacaac---attgatatggttactattaacccagcaatggtcatagggcctctcttgca |
230 |
Q |
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| T |
2707585 |
aaacaacattattgacatggttactactaaaccagcaatggtcattgggcctctcttgca |
2707644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 26102372 - 26102451
Alignment:
| Q |
151 |
gctgcatggaaatttgttaaagaaaacaacattgatatggttactattaacccagcaatggtcatagggcctctcttgca |
230 |
Q |
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| T |
26102372 |
gctgcctggaaatttgttaatgaaaacaacattgacatggtttctcttaacccaacaatggtggcaggacctctcttgca |
26102451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 25934739 - 25934823
Alignment:
| Q |
128 |
tttcgaaaacattggctgaagaagctgcatggaaatttgttaaagaaaacaacattgatatggttactattaacccagcaatggt |
212 |
Q |
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| T |
25934739 |
tttcgaagactttggctgaggctgctgcctggaaatttgtaaatgaaaacagcattgacatggttgctattaacccaacaatggt |
25934823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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