View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19338_low_1 (Length: 448)
Name: NF19338_low_1
Description: NF19338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19338_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 3916181 - 3915748
Alignment:
| Q |
1 |
ctttgtttgttttggcctttgttttgccctgattatcaaaagatgtgtctttattacaaagccacagaagaagaagaagctggtccaaatgctcaaagcg |
100 |
Q |
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| T |
3916181 |
ctttgtttgttttggcctttgttttgtcctgattatcaaaagatgtgtctttattacaaagccacagaagaagaag---ctggtccaaatgctcaaaccg |
3916085 |
T |
|
| Q |
101 |
tggctaaatcccctaatgttccatgatttcataatgttgctatatggcttgtgtgttatagatatctatatgtttgaagtgtgattctgaaagtattatt |
200 |
Q |
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| T |
3916084 |
tggctaaatcccctaatgttccatgatttcataatgttgctatatggcttgtgtgttatagatatctatatgtttgaagtgtgattgtgaaagtattatt |
3915985 |
T |
|
| Q |
201 |
ataatatcaaaattaaatatagctaattataaataacttaataggcctccactatagttgtgtgccttacttagatttttaatttgtggcatgtatttgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3915984 |
ataatatcaaaattaaatatagctaattataaataacttaataggcctccactatagttgtgtgccttacttagatttttaatttgtggcatgtatttgt |
3915885 |
T |
|
| Q |
301 |
atccttgttccatgcatatcattgttatatgctatgattgaaataaattttttcaagtttatttattttaagaaaaattgatacaaatttagtctagaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3915884 |
atccttgttccatgcatatcattgttatatgctatgattgaaataaattttttcaagtttatttattttaagaaaaattgatacaaatttagtctagaaa |
3915785 |
T |
|
| Q |
401 |
tcaacatcacattatatagaacgtgtttatagatatt |
437 |
Q |
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|||||||||||||||| |||||||||||||||||||| |
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| T |
3915784 |
tcaacatcacattatacagaacgtgtttatagatatt |
3915748 |
T |
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