View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19338_low_5 (Length: 371)
Name: NF19338_low_5
Description: NF19338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19338_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 45201567 - 45201230
Alignment:
| Q |
18 |
taaaacttaaacactcaaccacaaccacaagtacgagattctagattgnnnnnnngtgtctggtttaacaatacggtcattatcacaattgagctaggta |
117 |
Q |
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| T |
45201567 |
taaaacttaaacactcaaccacaaccacaagtacgagattctagattgaaaaaaagtgtctggtttaacaatacggtcattatcacaattgagctaggta |
45201468 |
T |
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| Q |
118 |
agtgcataaatttgtacaaaatgaagaaaattaattgggcaacatctctacaaaatgtttatatcacgaatttatagcttatggccacgagtatggttgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45201467 |
agtgcataaatttgtacaaaatgaagaaaattaattgggcaacatctctacaaaatgtttatatcacgaatttatagcttatggccacgagtatggttgt |
45201368 |
T |
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| Q |
218 |
tagtcttaatatgtgtcaattagctattacaatgcacgttgnnnnnnncaaatgtagtgtagttagatctaaggacaatgaattgccacatgcatgaaac |
317 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45201367 |
tagtcttaatatgtgtcaattacctattacaatgcacgttgtttttttcaaatgtagtgtagttagatctaaggacaatgaattgccacatgcatgaaac |
45201268 |
T |
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| Q |
318 |
aatttaatggcataaacaaagtcaaaacaaaacccaca |
355 |
Q |
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||||||||||||| |||||||||||||||||||||||| |
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| T |
45201267 |
aatttaatggcatgaacaaagtcaaaacaaaacccaca |
45201230 |
T |
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