View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19338_low_6 (Length: 341)
Name: NF19338_low_6
Description: NF19338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19338_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 11821468 - 11821780
Alignment:
| Q |
18 |
aaaagtataggcaaactagagctaaaggtagcaaagaatagaaaatggagggcacaaatgttttggtgagtttttctttgaatgtgtttataattgttat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11821468 |
aaaagtataggcaaactagagctaaaggtagcaaagaatagaaaatggagggcacaaatgttttggtgagtttttctttgaatgtgtttataattgttat |
11821567 |
T |
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| Q |
118 |
catcttctttcaaagcttttcttattctaggttttggctttgttgtaccttacttgttgataatatatatccttggagctggttgtgtttttgtgctata |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11821568 |
catcttctttcaaagcttttcttattctaggttttggctttgttgtaccttacttgttgataatatatatccttggagctggtggtgtttttgtgctata |
11821667 |
T |
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| Q |
218 |
gttctgaagtttgcataaagtggagcattaaaactacttcagtcttcatgcttagagtgggatgcatttctggttatgtcatatatgaggcaatgtggag |
317 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11821668 |
gttccatagtttgcataaagtggagcattaaaactacttcagtcttcatgcttagagtgggatgcatttctggttatctcatatatgaggcaatgtggag |
11821767 |
T |
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| Q |
318 |
tttaatgtctgtg |
330 |
Q |
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||||||||||||| |
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| T |
11821768 |
tttaatgtctgtg |
11821780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 15273690 - 15273576
Alignment:
| Q |
18 |
aaaagtataggcaaactagagctaaaggtagcaaagaatagaaaatggagggcacaaatgttttggtgagtttttctttgaatgtgtttataattgttat |
117 |
Q |
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| T |
15273690 |
aaaagtataggcaaaatagagctacaagtaacagcgaatagaaaattgagggaacaaatattttggtgagtttttctttgaatgtgtttgtaattgttac |
15273591 |
T |
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| Q |
118 |
catcttctttcaaag |
132 |
Q |
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| T |
15273590 |
catcttctttcaaag |
15273576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 44249730 - 44249874
Alignment:
| Q |
18 |
aaaagtataggcaaactagagctaaaggtagcaaagaatagaaaatggagggcacaaatgttttggtgagtttttctttgaatgtgtttataattgttat |
117 |
Q |
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|||||||||| |||| |||||| |||||||| | ||||||||||| |||||||||||||||||||||| |||||||||||||| ||| || |||| | |
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| T |
44249730 |
aaaagtatagacaaattagagcgaaaggtagtagtgaatagaaaattgagggcacaaatgttttggtgaatttttctttgaatggttttgtagttgtggt |
44249829 |
T |
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| Q |
118 |
catcttctttcaaagc-ttttcttattctaggttttggctttgtt |
161 |
Q |
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| T |
44249830 |
catcttttttcaaagcgttttcttattctcgtttttggctttgtt |
44249874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 44253340 - 44253425
Alignment:
| Q |
18 |
aaaagtataggcaaactagagctaaaggtagcaaagaatagaaaatggagggcacaaatgttttggtgagtttttctttgaatgtg |
103 |
Q |
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|||||||||| |||| |||||||| |||||||| |||||||| || ||| ||| ||||||||||||||||||||||||||||||| |
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| T |
44253340 |
aaaagtatagacaaattagagctataggtagcagtgaatagaagattgagtgcaaaaatgttttggtgagtttttctttgaatgtg |
44253425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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