View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19339_high_1 (Length: 499)
Name: NF19339_high_1
Description: NF19339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19339_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 41703745 - 41704045
Alignment:
| Q |
14 |
ttctgtatcacaatatctaacttctttttggtt--------ataaaagtgaaaaccataaagttagaattaggagaaatt----gttttagagacgtaaa |
101 |
Q |
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| T |
41703745 |
ttctgtgtcacaatatctaacttctttttggttgatgatttataaaagtgaaaaccataaagttagaattaggagaaattaattgttttagagacgtaaa |
41703844 |
T |
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| Q |
102 |
tgaaactgactacttgagatnnnnnnnncactatagacaatattggtgggtttgaaattggggtcccctaatcaatagctttgttatttggttaaacatg |
201 |
Q |
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| T |
41703845 |
tgaaactgactacttgagat---------aaaaaaaacactattggtgggtttgaaattggggtcccctaatcaatagctttgctatttggttaaacatg |
41703935 |
T |
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| Q |
202 |
cacagtatattttgtaatggtagttagccaagccttttagcaccagaatttcactaccatttccacacaaaaaagggttctaagcaaggactgtgacagg |
301 |
Q |
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| T |
41703936 |
cacagtatattttgtaatggttgttagccaagccttttagcatcagaatttcactactatttccacacagaaaagggttgtaagcaaggactgtgacagg |
41704035 |
T |
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| Q |
302 |
ttttgaattc |
311 |
Q |
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| T |
41704036 |
ttttgaattc |
41704045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 399 - 484
Target Start/End: Original strand, 41704139 - 41704228
Alignment:
| Q |
399 |
tagtaccaaagtttgtcaaatactatgattgaga----agtaaaaaaccagaaacacagattgatgcacagtctcaaatttagtagatta |
484 |
Q |
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| T |
41704139 |
tagtaccaaagtttgtcaaatactatgattgagagagaagtaaaaaaccagaaacacagattgatgcacagtctcaaatttagtagatta |
41704228 |
T |
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