View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19339_high_12 (Length: 229)
Name: NF19339_high_12
Description: NF19339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19339_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 43599185 - 43599248
Alignment:
| Q |
14 |
aatattagtttgttcaaatagtgtatcgcaaaataacagtcatttgttcgaattccactattca |
77 |
Q |
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| T |
43599185 |
aatattagtttgttcaaatagtgtatcgcaaaataacagtcatttgttcgaattccactattca |
43599248 |
T |
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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 210
Target Start/End: Original strand, 43599247 - 43599335
Alignment:
| Q |
111 |
cacaattttctatgaaacaaatacaatttttaatgatgcctttaatatgattttggatgattaattcttgcagatatgttaagagtagaaatgataagca |
210 |
Q |
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| T |
43599247 |
cacaattttctatgaaacaaaaacaatttttaatgatgacttt-----------ggatgattaattcttgcagatatgttaagagtagaaatgataagca |
43599335 |
T |
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