View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19339_high_13 (Length: 226)
Name: NF19339_high_13
Description: NF19339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19339_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 68 - 207
Target Start/End: Complemental strand, 45391131 - 45390992
Alignment:
| Q |
68 |
ctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttcc |
167 |
Q |
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| T |
45391131 |
ctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttcc |
45391032 |
T |
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| Q |
168 |
aggtgttgaagaagtgataactgattgcaagtctcatacg |
207 |
Q |
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| T |
45391031 |
aggtgttgaagaagtgataactgattgcaagtctcatacg |
45390992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 45386745 - 45386625
Alignment:
| Q |
85 |
cctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttccaggtgttgaagaagtga |
184 |
Q |
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| T |
45386745 |
cctccagcagagattttgctgagagttttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttccaggtgttgaagaagtga |
45386646 |
T |
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| Q |
185 |
taactgattgcaagtctcata |
205 |
Q |
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| T |
45386645 |
taactgattgcaaatctcata |
45386625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 68 - 207
Target Start/End: Complemental strand, 734739 - 734600
Alignment:
| Q |
68 |
ctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttcc |
167 |
Q |
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| T |
734739 |
ctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttcc |
734640 |
T |
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| Q |
168 |
aggtgttgaagaagtgataactgattgcaagtctcatacg |
207 |
Q |
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| T |
734639 |
aggtgttgaagaagtgatagctgattgcaagtctcatacg |
734600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 40578235 - 40578165
Alignment:
| Q |
101 |
tgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttccaggt |
171 |
Q |
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| T |
40578235 |
tgcttaaagtcttcatgcattgtgaaggttgtgctcgtaaagttcgtcgttcactcaaaggttttccaggt |
40578165 |
T |
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