View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19339_high_2 (Length: 413)
Name: NF19339_high_2
Description: NF19339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19339_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 11477123 - 11477510
Alignment:
| Q |
19 |
tgaaggctatgcaatcaactgcatagagccataatgnnnnnnncaaaagatcaattaattagtattaggaggagtaacgctactaacgaaaaaatcctcc |
118 |
Q |
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| T |
11477123 |
tgaaggctatgcaatcaactgcatagagccataatgaaaaaaacaaaagatcaattaattagtattaggaggagtaacgctactaacgaaaaaatcctcc |
11477222 |
T |
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| Q |
119 |
tcaacattatcatcatggcagcactgaaaagtggtaagaacatgcatattccggcgacactcggggcacgtgagtctatcaggtatccttcccattgaat |
218 |
Q |
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| T |
11477223 |
tcaacattatcatcatggcagcactgaaaagtggtaagaacatgcatattccgacgacactcggggcacgtgagtctatcaggtatccttcccattgaat |
11477322 |
T |
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| Q |
219 |
gtgagaattcaaatctacaacaagggttatcaactgcatgaagcttcccataatgttccttaaaagctgtttggaaaccatctcgttcagcatgttcttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||| |
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| T |
11477323 |
gtgagaattcaaatctacaacaagggttatcaactgcatgaagcttcccataatgttctttaaaagctgtttcaaaaccgtctcgttcagcatgttcttt |
11477422 |
T |
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| Q |
319 |
ccacatgagatcatactcaatcaatgattgtaaaccagttgaagcatgtccattgacaacaatttgtgacccttttgctagaataatc |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11477423 |
ccacatgagatcatactcaatcaatgattgtaaaccagttgaagcatgtccattgacaacaatttgtgacccttttgctagaacaatc |
11477510 |
T |
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