View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19339_high_6 (Length: 355)
Name: NF19339_high_6
Description: NF19339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19339_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 10 - 338
Target Start/End: Complemental strand, 47502166 - 47501823
Alignment:
| Q |
10 |
catcatcacatgcaaaaagtcagtctttaaaaattaatcaatttaagtacttgttgattttgaaactttaaaataacaca----agtctataaccaccca |
105 |
Q |
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| T |
47502166 |
catcatcacatgcaaaaagtcagtctttaaaaattaatcaatttaagtacttgttgattttgaaactttaaaataacacacacaagtctataagcaccca |
47502067 |
T |
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| Q |
106 |
tattatcnnnnnnnnnnnnnnnnnnnaaacgccaatattagtagtattttcttctttttactagggtttggatctgggtggacgaacttcataaactttt |
205 |
Q |
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| T |
47502066 |
tattatcttttctttttcatttttttaaacgccaatattagcagtattttcttctttttactagggtttggatctgggtggacgaacttcataaactttt |
47501967 |
T |
|
| Q |
206 |
aggtcaaattagttgaaatgatgtagatca-------taaa--------cttttatatataacactactcggtttgaaatacgggtcactcaatcttgat |
290 |
Q |
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||||||||||||||||||| |||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47501966 |
aggtcaaattagttgaaattatgtagatcaatattagtaaataagtgtcctgctatatataacactactcggtttgaaatacgggtcactcaatcttgat |
47501867 |
T |
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| Q |
291 |
ccaacaacccaaatttaaataatttaattagttcccgctgagatattt |
338 |
Q |
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| T |
47501866 |
ccaacaacccaaatttaaataat----ttagttctcgctgagatattt |
47501823 |
T |
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