View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19339_high_8 (Length: 264)
Name: NF19339_high_8
Description: NF19339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19339_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 41754828 - 41755058
Alignment:
| Q |
18 |
gaaatgtgattccataaggttgcttgtacgatggtgagcccacaaaatttcctgtgtcagcatatgaatctccaaatacaaacaattttacagagctgct |
117 |
Q |
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| T |
41754828 |
gaaatgtgattccataaggttgcttgtacgatggtgagcccacaaaatttcctgtgtcagcatatgaatctccaaatacaaacaattttacagagttgct |
41754927 |
T |
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| Q |
118 |
gttgttgtcgtatacaccatatgatttcttagtcccttcaactacttctgtaacatttgcattaacttatgtcacatgatttcgaaacaataaaaatgaa |
217 |
Q |
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| T |
41754928 |
gtt---gtcgtatacaccatatgatttcttagtcccttcaactacttctgtaacatttgcattaacttatgtcacatgatttcgaaacaataaaaatgaa |
41755024 |
T |
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| Q |
218 |
taaaccaaagacatttaattgaattattgtgatg |
251 |
Q |
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| T |
41755025 |
taaaccaaagacatttaattgaattattatgatg |
41755058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 41760738 - 41760936
Alignment:
| Q |
18 |
gaaatgtgattccataaggttgcttgtacgatggtgagcccacaaaatttcctgtgtcagcatatgaatctccaaatacaaacaattttacagagctgct |
117 |
Q |
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| T |
41760738 |
gaaatgtgattccataaggttgcttgtacgatggtgagcccataaaattgcctgtatcagcatatgagtctccaaatacaaacaattttacaga------ |
41760831 |
T |
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| Q |
118 |
gttgttgtcgtatacaccatatgatttcttagtcccttcaactacttctgtaacatttgcattaacttatgtcacatgatttcgaaacaataaaaatgaa |
217 |
Q |
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| T |
41760832 |
gtttttgtcatacacaccatatgatttcttagtcccttcgaccacttctgtaaaatttgcattaatttatgtcacacaatagaaaaccaataaaaatgaa |
41760931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 42225933 - 42225971
Alignment:
| Q |
68 |
cctgtgtcagcatatgaatctccaaatacaaacaatttt |
106 |
Q |
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| T |
42225933 |
cctgtgtctgcatatgaatctccaaagacaaacaatttt |
42225971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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