View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19339_low_11 (Length: 236)
Name: NF19339_low_11
Description: NF19339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19339_low_11 |
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| [»] scaffold0703 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 16862687 - 16862470
Alignment:
| Q |
1 |
acatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagctttagtgcacacaaagaa |
100 |
Q |
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| T |
16862687 |
acataatagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagctttagtgcacacaaagaa |
16862588 |
T |
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| Q |
101 |
tagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatggtatacccctggtggtgagattaacacgggtaggaaggcattga |
200 |
Q |
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| T |
16862587 |
tagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatggtatacccctggtggtgagattaacacgggtaggaaggcattga |
16862488 |
T |
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| Q |
201 |
tgagcaagacgccaaaga |
218 |
Q |
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||||||||||||||||| |
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| T |
16862487 |
cgagcaagacgccaaaga |
16862470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 313 - 529
Alignment:
| Q |
1 |
acatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagctttagtgcacacaaagaa |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
313 |
acatagtagtaaaatcattagcccgatgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagctttagtgcacacaaagaa |
412 |
T |
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| Q |
101 |
tagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatggtatacccctggtggtgagattaacacgggtaggaaggcattga |
200 |
Q |
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| T |
413 |
tagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatgatatacccctggtggtgagattaacacgggtaggaaggcattga |
512 |
T |
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| Q |
201 |
tgagcaagacgccaaag |
217 |
Q |
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||||||||||||||||| |
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| T |
513 |
tgagcaagacgccaaag |
529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 12459421 - 12459637
Alignment:
| Q |
1 |
acatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagctttagtgcacacaaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12459421 |
acatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagctttagtgcacacaaagaa |
12459520 |
T |
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| Q |
101 |
tagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatggtatacccctggtggtgagattaacacgggtaggaaggcattga |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12459521 |
tagatgcatgtgtgattctgccaatgattcacacatcacacacgtatcatcgcatgatatacccctggtggtgagattaacacgggtaggaaggcattga |
12459620 |
T |
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| Q |
201 |
tgagcaagacgccaaag |
217 |
Q |
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| T |
12459621 |
tgagcaagacgccaaag |
12459637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 14648067 - 14647851
Alignment:
| Q |
1 |
acatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagctttagtgcacacaaagaa |
100 |
Q |
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|||||| ||| ||||||||||| | || |||||||| ||||| || ||||||| |||| |||||||||| |||||||| || | || |||||||| |
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| T |
14648067 |
acatagaagtgaaatcattagcttgttggagcagctcacgaatttgatttcccatcccaatatgatcccaacattccatagccttggaacaaacaaagaa |
14647968 |
T |
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| Q |
101 |
tagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatggtatacccctggtggtgagattaacacgggtaggaaggcattga |
200 |
Q |
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|| ||||| || ||| || | |||||||||||| ||||||| ||| || ||||| || || || ||| ||||||| || ||||| | |||||| |
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| T |
14647967 |
aaggtgcatgtgaatttcagctagtgattcacacataacacacgaatcgtcacatggaatgcctctcgtgttgagatttgtgcgtgtaggcaagcattgg |
14647868 |
T |
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| Q |
201 |
tgagcaagacgccaaag |
217 |
Q |
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||||||||||| ||||| |
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| T |
14647867 |
tgagcaagacgtcaaag |
14647851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 53986507 - 53986663
Alignment:
| Q |
1 |
acatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagctttagtgcacacaaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53986507 |
acatagtagtaaaatcattagcccggtgcagcagctcgcgaatatggtttcccaaattaatacgatcccaacagtccatagctttagtgcacacaaagaa |
53986606 |
T |
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| Q |
101 |
tagatgcatatgtgattctgccaatgattcacacatcacacacgtatcatcgcatgg |
157 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
53986607 |
tagatgcatgtgtgattctgccaatgattcacacatcacacacatatcatcgcatgg |
53986663 |
T |
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