View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19339_low_3 (Length: 412)
Name: NF19339_low_3
Description: NF19339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19339_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 310
Target Start/End: Original strand, 13535497 - 13535796
Alignment:
| Q |
10 |
catcatcatcaactgtatctaaagaaggggcaagacaacttgggtacttaaatgggagagttgtcaaaggcttgtcacaagaaagtcctagaatagccaa |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13535497 |
catcatcatcaactgtatctaaagaaggggcaagacaacttgggtacttaaatgggagagttgtcaaaggcttgtcatcagaaagtcctagaatagccaa |
13535596 |
T |
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| Q |
110 |
acctaatgtgtatccaagggcaagggctaccggaacagcaaccgcatttccaacttgagtatacctgcattggaattagaagcattgagtatctgttata |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13535597 |
acctaatgtgtatccaagggcaagggctaccggaacagcgaccgcatttccaacttgagtatacctgcattggaattagaatcattgagtatctgttata |
13535696 |
T |
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| Q |
210 |
gataatgtaagagataggagaaaattaacttaactaaaactataactacatttacaccactaagaaatattacattaagagacctaaacaggtatgaacc |
309 |
Q |
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| T |
13535697 |
gataatgtaagagata-gagaaaattaacttaactaaaactataactacatttacaccactaagaaatattacattaagagacctaaacaggtatgaacc |
13535795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 31938859 - 31939029
Alignment:
| Q |
10 |
catcatcatcaactgtatctaaagaaggggcaagacaacttgggtacttaaatgggagagttgtcaaaggcttgtcacaagaaagtcctagaatagccaa |
109 |
Q |
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|||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||| |||||||||| ||||| ||| ||||||||||| || || |
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| T |
31938859 |
catcatcatcaactacatctaaagaatgggctagacaacttgggtacttaaaggggagaattgtcaaaggactgtcatcagagagtcctagaattgctaa |
31938958 |
T |
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| Q |
110 |
acctaatgtgtatccaagggcaagggctaccggaacagcaaccgcatttccaacttgagtatacctgcatt |
180 |
Q |
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| T |
31938959 |
acctaatgtgtatccaagggcaagggccacaggaacagcaactgcgtttccaacttgaatatacctgcatt |
31939029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 9389215 - 9389382
Alignment:
| Q |
13 |
catcatcaactgtatctaaagaaggggcaagacaacttgggtacttaaatgggagagttgtcaaaggcttgtcacaagaaagtcctagaatagccaaacc |
112 |
Q |
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||||||||||| |||||||||| |||| |||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||| || ||||| |
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| T |
9389215 |
catcatcaactacatctaaagaacgggccagacaacttgggtacttaaaggggagagttgtcaaaggactgtcatcagagagtcctagaattgctaaacc |
9389314 |
T |
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| Q |
113 |
taatgtgtatccaagggcaagggctaccggaacagcaaccgcatttccaacttgagtatacctgcatt |
180 |
Q |
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| T |
9389315 |
taatgtgtatccaagggcaagggccacaggaacagcaactgcgtttccaacttgcatgtacctgcatt |
9389382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 19810254 - 19810099
Alignment:
| Q |
11 |
atcatcatcaactgtatctaaagaaggggcaagacaacttgggtacttaaatgggagagttgtcaaaggcttgtcacaagaaagtcctagaatagccaaa |
110 |
Q |
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||||||||||||| | |||||| | |||| ||||| | ||| |||||||| ||||||| ||||| | |||||| | | |||||| |||||| | || |
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| T |
19810254 |
atcatcatcaactacagctaaaggacgggctagacagcatggctacttaaacaggagagtcgtcaacgacttgtcgtcaaagagtccttgaataggctaa |
19810155 |
T |
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| Q |
111 |
-cctaatgtgtatccaagggcaagggctaccggaacagcaaccgcatttccaactt |
165 |
Q |
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| T |
19810154 |
tcctaatgtgtgtccgaggtcaagggccattggaacagtaaccgcatttccaactt |
19810099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 1337028 - 1337184
Alignment:
| Q |
10 |
catcatcatcaactgtatctaaagaaggggcaagacaacttgggtacttaaatgggagagttgtcaaaggcttgtcacaagaaagtcctagaatagccaa |
109 |
Q |
| |
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||||||||| |||| |||||||| | |||| |||||||| ||||||||||| ||||||||||||||||| |||| || |||||||||| ||||| |
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| T |
1337028 |
catcatcattaactacatctaaaggacgggctagacaactagggtacttaaaggggagagttgtcaaaggaccgtcatcggagtgtcctagaattgccaa |
1337127 |
T |
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| Q |
110 |
acctaatgtgtatccaagggcaagggctaccggaacagcaaccgcatttccaacttg |
166 |
Q |
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||||||||||||||||||||||||||| || ||||||||||| || ||||||||||| |
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| T |
1337128 |
acctaatgtgtatccaagggcaagggcaacaggaacagcaactgcgtttccaacttg |
1337184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 5639119 - 5639289
Alignment:
| Q |
10 |
catcatcatcaactgtatctaaagaaggggcaagacaacttgggtacttaaatgggagagttgtcaaaggcttgtcacaagaaagtcctagaatagccaa |
109 |
Q |
| |
|
|||||||||||||| | |||||| | |||||||||||||||| |||||||| ||||||||||||||||| ||||| | ||| ||||| ||| || || |
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| T |
5639119 |
catcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaaaggattgtccccagagcgtccttgaagtgctaa |
5639218 |
T |
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| Q |
110 |
acctaatgtgtatccaagggcaagggctaccggaacagcaaccgcatttccaacttgagtatacctgcatt |
180 |
Q |
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||| ||||||||||| |||||||| | || |||||||||||||||||||||||||| | |||||||||| |
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| T |
5639219 |
acccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacctgcatt |
5639289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 33290758 - 33290799
Alignment:
| Q |
268 |
actaagaaatattacattaagagacctaaacaggtatgaacc |
309 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||| |
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| T |
33290758 |
actaagaaatattacactaagagacctaaacaggtctgaacc |
33290799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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