View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19339_low_4 (Length: 378)

Name: NF19339_low_4
Description: NF19339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19339_low_4
NF19339_low_4
[»] chr2 (5 HSPs)
chr2 (12-364)||(4284860-4285212)
chr2 (5-129)||(1645068-1645192)
chr2 (5-242)||(5989335-5989571)
chr2 (7-243)||(5983379-5983612)
chr2 (183-255)||(1645003-1645075)
[»] chr5 (6 HSPs)
chr5 (5-243)||(3031386-3031624)
chr5 (5-133)||(43095115-43095242)
chr5 (122-243)||(28873683-28873803)
chr5 (122-233)||(28872238-28872348)
chr5 (157-211)||(2357763-2357817)
chr5 (198-246)||(43095002-43095049)
[»] chr6 (3 HSPs)
chr6 (5-242)||(367266-367501)
chr6 (5-242)||(369115-369350)
chr6 (5-133)||(7534187-7534314)
[»] chr1 (1 HSPs)
chr1 (5-135)||(10916936-10917065)
[»] chr7 (2 HSPs)
chr7 (157-231)||(44968830-44968903)
chr7 (5-211)||(35323970-35324176)
[»] chr3 (2 HSPs)
chr3 (5-108)||(27237665-27237768)
chr3 (184-242)||(12221781-12221838)
[»] scaffold0014 (2 HSPs)
scaffold0014 (144-243)||(34330-34430)
scaffold0014 (5-100)||(34463-34558)
[»] chr4 (2 HSPs)
chr4 (5-50)||(53011299-53011344)
chr4 (171-242)||(53008159-53008229)


Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 364
Target Start/End: Complemental strand, 4285212 - 4284860
Alignment:
Q  12 atgaataaaatacttgtgtaattttattgaatgagttggaatacttatttacaagttatatgaaactatatatacatcaagtgatgtaataaactagtaa 111  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| |||| ||| |||| ||| |    
T  4285212 atgaataaaagacttgtgtaattttattgaatgaattggaatacttatttacaaggtatatgaagctatatatacatcaattgatctaacaaaccagtga 4285113  T
Q  112 aacaaaccataacaaactcttagcttcgcgtgcaagtaacaataattagttacttcacatgcaagtatctaaacaaactattaaacaaagataaaactaa 211  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4285112 aacaaaccataacaaactcttaacttcacgtgcaagtaacaatagttagttacttcacatgcaagtatctaaacaaactattaagcaaagataaaactaa 4285013  T
Q  212 ttctaactaataatgaattacttaaccaataataatatctctccttttcgcatttagtatatgcgagtgtgacgaccttaaaaaattggatgcacatcaa 311  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4285012 ttctaaccaataatgaattacttaaccaataataatatctctctttttcgcatttagtatatgcgagtgtgacgaccttaaaaaattggatgcacatcaa 4284913  T
Q  312 acatttgtcccaacatccatagatgaatgcgataccataaatagaaattattg 364  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4284912 acatttgtctcaacatccatagatgaatgcgataccataaatagaaattattg 4284860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 1645192 - 1645068
Alignment:
Q  5 gagagagatgaataaaatacttgtgtaattttattgaatgagttggaatacttatttacaagttatatgaaactatatatacatcaagtgatgtaataaa 104  Q
    |||||| |||| ||||| |||| | |||||||||||||||| |||||||| ||||||||||  |||||||| |||||||||||||||||||||||| |||    
T  1645192 gagagatatgagtaaaagacttatataattttattgaatgaattggaatatttatttacaaagtatatgaagctatatatacatcaagtgatgtaacaaa 1645093  T
Q  105 ctagtaaaacaaaccataacaaact 129  Q
    ||||| |||||||||||||||||||    
T  1645092 ctagtgaaacaaaccataacaaact 1645068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 5989571 - 5989335
Alignment:
Q  5 gagagagatgaataaaatacttgtgtaattttattgaatgagttggaatacttatttacaagttatatgaaactatatatacatcaagtgatgtaataaa 104  Q
    |||||| ||| |||||| ||||||||||||||||||||||| ||||||||  ||||||||||    ||||   ||||||||||||||||||||||| |||    
T  5989571 gagagatatgtataaaagacttgtgtaattttattgaatgaattggaataactatttacaagagtaatgagg-tatatatacatcaagtgatgtaacaaa 5989473  T
Q  105 ctagtaaaacaaac-cataacaaactcttagcttcgcgtgcaagtaacaataattagttacttcacatgcaagtatctaaacaaactattaaacaaagat 203  Q
     |   ||||||||| | |||||||||  |  |||| | ||||||||||   | ||||||||||||  ||||||| ||||||||||||| |||  ||||||    
T  5989472 atctgaaaacaaactcctaacaaacttattacttcacatgcaagtaacttgagttagttacttcaagtgcaagtttctaaacaaactactaattaaagat 5989373  T
Q  204 aaaactaattctaactaataatgaattacttaaccaata 242  Q
    ||| ||||  |||||||| | ||||||||| ||||||||    
T  5989372 aaagctaaaactaactaa-actgaattactaaaccaata 5989335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 5983612 - 5983379
Alignment:
Q  7 gagagatgaataaaatacttgtgtaattttattgaatgagttggaatacttatttacaagttatatgaaactatatatacatcaagtgatgtaataaact 106  Q
    |||| |||||||||| ||||||||||||||||||||||| ||||||||  ||||||||||    ||||     ||||||||||||||||||||| ||| |    
T  5983612 gagatatgaataaaagacttgtgtaattttattgaatgaattggaataactatttacaagagtaatgagg---tatatacatcaagtgatgtaacaaaat 5983516  T
Q  107 agtaaaacaaac-cataacaaactcttagcttcgcgtgcaagtaacaataattagttacttcacatgcaagtatctaaacaaactattaaacaaagataa 205  Q
       ||||||||| | |||||||||  |  |||| | ||||||||||   | ||||||||||||  ||||||| ||||||||||||| ||| |||| ||||    
T  5983515 ctgaaaacaaactcctaacaaacttattacttcacatgcaagtaacttgatttagttacttcaagtgcaagtttctaaacaaactactaatcaaaaataa 5983416  T
Q  206 aactaattctaactaataatgaattacttaaccaataa 243  Q
    | ||||  |||||||| | ||||||||| |||||||||    
T  5983415 agctaaaactaactaa-actgaattactaaaccaataa 5983379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 1645075 - 1645003
Alignment:
Q  183 aacaaactattaaacaaagataaaa-ctaattctaactaataatgaattacttaaccaataataatatctctcc 255  Q
    ||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||| || ||||||||    
T  1645075 aacaaactattaagcaaagataaaaactaattctaactaa-aatgaattacttaaccaataaaaacatctctcc 1645003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 5 - 243
Target Start/End: Complemental strand, 3031624 - 3031386
Alignment:
Q  5 gagagagatgaataaaatacttgtgtaattttattgaatgagttggaatacttatttacaagttatatgaaactatatatacatcaagtgatgtaataaa 104  Q
    |||||| |||| || || ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||    
T  3031624 gagagaaatgagtagaagacttgtgtaattttattgaatgaattggaatacttatttacaaggtatatgaagctatatatacatcaagtgatgtaacaaa 3031525  T
Q  105 ctagtaaaacaaaccataacaaactcttagcttcgcgtgcaagtaacaataattagttacttcacatgcaagtatctaaacaaactattaaacaaagata 204  Q
    ||| | ||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3031524 ctaatgaaacaaaccataacaaactcttaacttcacgtgcaagtaacaatagttagttacttcacatgcaagtatctaaacaaactattaagcaaagata 3031425  T
Q  205 aaactaattctaactaataatgaattacttaaccaataa 243  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3031424 aaactaattctaactaataatgaattacttaaccaataa 3031386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 43095242 - 43095115
Alignment:
Q  5 gagagagatgaataaaatacttgtgtaattttattgaatgagttggaatacttatttacaagttatatgaaactatatatacatcaagtgatgtaataaa 104  Q
    |||||| |||| ||||| ||||||| ||||| ||||||||| |||||||   |||||||||| |||||||| |||||||||||||||||||||||| |||    
T  43095242 gagagatatgagtaaaagacttgtgaaattt-attgaatgaattggaattagtatttacaaggtatatgaacctatatatacatcaagtgatgtaacaaa 43095144  T
Q  105 ctagtaaaacaaaccataacaaactctta 133  Q
    ||||| |||||||||| ||||||||||||    
T  43095143 ctagtgaaacaaaccaaaacaaactctta 43095115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 28873683 - 28873803
Alignment:
Q  122 aacaaactcttagcttcgcgtgcaagtaacaataattagttacttcacatgcaagtatctaaacaaactattaaacaaagataaaactaattctaactaa 221  Q
    ||||||||| || |||| ||||||||||||   | ||||||||||||||||||||| ||||||||||||  ||||||||||||| |||||||||||||||    
T  28873683 aacaaactcataacttcacgtgcaagtaacttgagttagttacttcacatgcaagtttctaaacaaactgctaaacaaagataagactaattctaactaa 28873782  T
Q  222 taatgaattacttaaccaataa 243  Q
     ||||||||||| | |||||||    
T  28873783 -aatgaattactaatccaataa 28873803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 122 - 233
Target Start/End: Original strand, 28872238 - 28872348
Alignment:
Q  122 aacaaactcttagcttcgcgtgcaagtaacaataattagttacttcacatgcaagtatctaaacaaactattaaacaaagataaaactaattctaactaa 221  Q
    ||||||||| || |||| ||||||||||||   | ||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| |||    
T  28872238 aacaaactcataacttcacgtgcaagtaacttgagttagttacttcacatgcaagtttctaaacaaactgttaaacaaagataagactaattctaaataa 28872337  T
Q  222 taatgaattact 233  Q
     |||||||||||    
T  28872338 -aatgaattact 28872348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 2357763 - 2357817
Alignment:
Q  157 ttagttacttcacatgcaagtatctaaacaaactattaaacaaagataaaactaa 211  Q
    ||||||||||||  ||||||| |||||| |||||| ||| |||||||||||||||    
T  2357763 ttagttacttcaagtgcaagtttctaaataaactactaatcaaagataaaactaa 2357817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 43095049 - 43095002
Alignment:
Q  198 aaagataaaactaattctaactaataatgaattacttaaccaataataa 246  Q
    ||||| |||||||||||||||||| | ||||||||| ||||||||||||    
T  43095049 aaagacaaaactaattctaactaa-actgaattactaaaccaataataa 43095002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 367266 - 367501
Alignment:
Q  5 gagagagatgaataaaatacttgtgtaattttattgaatgagttggaatacttatttacaagttatatgaaactatatatacatcaagtgatgtaataaa 104  Q
    |||||| |||| ||||| ||||||  ||||| ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||    
T  367266 gagagatatgagtaaaagacttgtaaaattt-attgaatgaattggaatacttatttacaaggtatatgaagctatatatacatcaagtgatgtaacaaa 367364  T
Q  105 ctagtaaaacaaaccataacaaactcttagcttcgcgtgcaagtaacaataattagttacttcacatgcaagtatctaaacaaactattaaacaaagata 204  Q
    ||||| |||||||||||||| |||||||| |||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  367365 ctagtgaaacaaaccataacgaactcttaccttcacgtgcaagtaacaatagttagttacttcacatgcaagtttctaaacaaactattaagcaaagata 367464  T
Q  205 aaactaattctaactaataatgaattacttaaccaata 242  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  367465 aaactaattctaactaa-aatgaattacttaatcaata 367501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 369115 - 369350
Alignment:
Q  5 gagagagatgaataaaatacttgtgtaattttattgaatgagttggaatacttatttacaagttatatgaaactatatatacatcaagtgatgtaataaa 104  Q
    |||||| |||| ||||| ||||||  ||||| ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||    
T  369115 gagagatatgagtaaaagacttgtaaaattt-attgaatgaattggaatacttatttacaaggtatatgaagctatatatacatcaagtgatgtaacaaa 369213  T
Q  105 ctagtaaaacaaaccataacaaactcttagcttcgcgtgcaagtaacaataattagttacttcacatgcaagtatctaaacaaactattaaacaaagata 204  Q
    ||| | ||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| ||||||||    
T  369214 ctaatgaaacaaaccataacaaactcttaacttcacgtgcaagtaacaatagttagttacttcacatgcaagtttctaaacagactattaagcaaagata 369313  T
Q  205 aaactaattctaactaataatgaattacttaaccaata 242  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  369314 aaactaattctaactaa-aatgaattacttaaccaata 369350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 7534314 - 7534187
Alignment:
Q  5 gagagagatgaataaaatacttgtgtaattttattgaatgagttggaatacttatttacaagttatatgaaactatatatacatcaagtgatgtaataaa 104  Q
    |||||| |||| ||||| ||||||  ||||| ||||||||| || ||||   |||||||||| || ||||| |||||||||||||||||||||||| ||     
T  7534314 gagagatatgagtaaaagacttgtaaaattt-attgaatgaattagaattaatatttacaaggtaaatgaacctatatatacatcaagtgatgtaacaag 7534216  T
Q  105 ctagtaaaacaaaccataacaaactctta 133  Q
    ||||| |||||||||| ||||||||||||    
T  7534215 ctagtgaaacaaaccaaaacaaactctta 7534187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 10917065 - 10916936
Alignment:
Q  5 gagagagatgaataaaatacttgtgtaattttattgaatgagttggaatacttatttacaagttatatgaaactatatatacatcaagtgatgtaataaa 104  Q
    |||||| |||| ||||| ||| ||| ||||| ||||||||| |||||||   |||||||||| |||||||| | ||||| |||||||||||||||| |||    
T  10917065 gagagatatgagtaaaagactggtgaaattt-attgaatgaattggaattggtatttacaaggtatatgaatccatatacacatcaagtgatgtaacaaa 10916967  T
Q  105 ctagtaaaacaaaccataacaaactcttagc 135  Q
    ||||| |||||||||| ||||||||||||||    
T  10916966 ctagtgaaacaaaccaaaacaaactcttagc 10916936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 44968830 - 44968903
Alignment:
Q  157 ttagttacttcacatgcaagtatctaaacaaactattaaacaaagataaaactaattctaactaataatgaatta 231  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||| |||||||||    
T  44968830 ttagttacttcacatgcaagtttctaaacaaactactaaacaaagataagactaattctaactaa-aatgaatta 44968903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 211
Target Start/End: Original strand, 35323970 - 35324176
Alignment:
Q  5 gagagagatgaataaaatacttgtgtaattttattgaatgagttggaatacttatttacaagttatatgaaactatatatacatcaagtgatgtaataaa 104  Q
    |||||| |||| ||||| ||||||||||||||||||||||| ||| |||   ||||||||||    ||||   ||||||||||||||||||||||| |||    
T  35323970 gagagatatgagtaaaagacttgtgtaattttattgaatgaattgaaattactatttacaagagtaatgagg-tatatatacatcaagtgatgtaacaaa 35324068  T
Q  105 ctagtaaaacaaac-cataacaaactcttagcttcgcgtgcaagtaacaataattagttacttcacatgcaagtatctaaacaaactattaaacaaagat 203  Q
     |   ||||||||| | |||||||||  |  |||| | ||||||||||   | ||||||||||||  ||||||| ||||||||||||| ||| |||||||    
T  35324069 atctgaaaacaaactcctaacaaacttattacttcacatgcaagtaacttgagttagttacttcaagtgcaagtttctaaacaaactactaatcaaagat 35324168  T
Q  204 aaaactaa 211  Q
    ||| ||||    
T  35324169 aaagctaa 35324176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 27237768 - 27237665
Alignment:
Q  5 gagagagatgaataaaatacttgtgtaattttattgaatgagttggaatact-tatttacaagttatatgaaactatatatacatcaagtgatgtaataa 103  Q
    |||||| |||| ||||| ||||||| ||||| ||||||||| |||||||    |||||||||| |||||||| |||||||||||||||||||||||| ||    
T  27237768 gagagatatgagtaaaagacttgtgaaattt-attgaatgaattggaatttggtatttacaaggtatatgaacctatatatacatcaagtgatgtaacaa 27237670  T
Q  104 actag 108  Q
    |||||    
T  27237669 actag 27237665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 12221781 - 12221838
Alignment:
Q  184 acaaactattaaacaaagataaaactaattctaactaataatgaattacttaaccaata 242  Q
    |||||||| ||| |||||||||||||||||| |||||| ||||||||||| ||||||||    
T  12221781 acaaactactaaccaaagataaaactaattccaactaa-aatgaattactaaaccaata 12221838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 34430 - 34330
Alignment:
Q  144 caagtaacaataattagttacttcacatgcaagtatctaaac-----aaactattaaacaaagataaaactaattctaactaataatgaattacttaacc 238  Q
    ||||||||  || |||||||||||||||||||||||||||||     ||||||||||  |||||||||||||||||   |||| ||||||||||||||||    
T  34430 caagtaactttagttagttacttcacatgcaagtatctaaacaaattaaactattaagtaaagataaaactaattc---ctaa-aatgaattacttaacc 34335  T
Q  239 aataa 243  Q
    |||||    
T  34334 aataa 34330  T

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Target: scaffold0014; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 34558 - 34463
Alignment:
Q  5 gagagagatgaataaaatacttgtgtaatttt-attgaatgagttggaatacttatttacaagttatatgaaactatatatacatcaagtgatgtaa 100  Q
    |||||| |||||||||| ||||||  |||||| ||||||||| | |||||||||||||||||    ||| ||| ||| |||||||||||||||||||    
T  34558 gagagatatgaataaaagacttgtcaaatttttattgaatgaatgggaatacttatttacaatagctat-aaagtatttatacatcaagtgatgtaa 34463  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 53011344 - 53011299
Alignment:
Q  5 gagagagatgaataaaatacttgtgtaattttattgaatgagttgg 50  Q
    |||||| |||||||||| ||||||||||||||||||||||| ||||    
T  53011344 gagagatatgaataaaagacttgtgtaattttattgaatgaattgg 53011299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 53008229 - 53008159
Alignment:
Q  171 tgcaagtatctaaacaaactattaaacaaagataaaactaattctaactaataatgaattacttaaccaata 242  Q
    ||||||| ||||||||||||| ||| |||||||||| ||||  |||||||| | ||||||||| ||||||||    
T  53008229 tgcaagtttctaaacaaactactaatcaaagataaagctaaaactaactaa-actgaattactaaaccaata 53008159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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