View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1933_high_10 (Length: 218)
Name: NF1933_high_10
Description: NF1933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1933_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 42088240 - 42088421
Alignment:
| Q |
19 |
attgcaccgttattctcagttgtttgaaattgaagattttatgaaattggtaagacaaaacttttagattgaaaatgagatttaaaatgttggaaaacca |
118 |
Q |
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| T |
42088240 |
attgcaccgttattctcagttgtttgaaattgaagattttgtgaaattggtaagacaaaacttttagattgaacatgagatttaaaatgttggaaaacca |
42088339 |
T |
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| Q |
119 |
taccaatagttaagagagcaataaatactactataaaatttgtattgaaaatata--agttttaacttttaattaaacaatgatt |
201 |
Q |
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| T |
42088340 |
taccaatagttaagagagcaataaa---tactataaaatttgtcttaaaaatatagtagttttaagatttaattaaacaatgatt |
42088421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 39786472 - 39786512
Alignment:
| Q |
153 |
aaaatttgtattgaaaatataagttttaacttttaattaaa |
193 |
Q |
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| T |
39786472 |
aaaacttgtcttgaaaatataagttttaacttttgattaaa |
39786512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 34085226 - 34085270
Alignment:
| Q |
153 |
aaaatttgtattgaaaatataagttttaacttttaattaaacaat |
197 |
Q |
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| T |
34085226 |
aaaatttgttttgaaaatataagttttgacttttaattaagcaat |
34085270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 45438981 - 45439023
Alignment:
| Q |
150 |
tataaaatttgtattgaaaatataagttttaacttttaattaa |
192 |
Q |
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| T |
45438981 |
tataaaatttatcttaaaaatataagttttaacttttaattaa |
45439023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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