View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1933_low_2 (Length: 376)
Name: NF1933_low_2
Description: NF1933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1933_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 38214003 - 38213635
Alignment:
| Q |
1 |
ctgtctcttccacttccttctctgattctgcattgcaaagcaatgagcttgatgcttatggtagaagaagattgagatgggttcagaaatactttatgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38214003 |
ctgtctcttccacttccttctctgattctgcattgcaaagcaatgagcttgatgcttatggtagaagaagattgagatgggttcagaaatactttatgat |
38213904 |
T |
|
| Q |
101 |
ctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38213903 |
ctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatata |
38213804 |
T |
|
| Q |
201 |
atagccatc-----ttaatttgttatgattcttttattttatatattcctctata-tattttggtgtctatcttagataacacgtgatcaaataaatcaa |
294 |
Q |
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||||||||| |||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||| |
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| T |
38213803 |
atagccatcttattttaatttgttatgattctttgattttatatattcctctatatttttttggtgtctatcttagataacatgtgatcaaataaatcac |
38213704 |
T |
|
| Q |
295 |
attctttgtagtttgtatcacttccttatcagttttcggtatattgagaacactatatataccctgttc |
363 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38213703 |
attctttgtagtttgtaccacttccttatcagttttcggtatattgagaacactatatataccctgttc |
38213635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 38218222 - 38217913
Alignment:
| Q |
1 |
ctgtctcttccacttccttctctgattctgcattgcaaagcaatgagcttgatgcttatggtagaagaagattgagatgggttcagaaatactttatgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38218222 |
ctgtctcttccacttccttctctgattctgcattgcaaagcaatgagcttgatgcttatggtagaagaagattgagatgggttcagaaatactttatgat |
38218123 |
T |
|
| Q |
101 |
ctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38218122 |
ctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatata |
38218023 |
T |
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| Q |
201 |
atagccatc-----ttaatttgttatgattcttttattttatatattcctctata-tattttggtgtctatcttagataacacgtgatcaaataaatcaa |
294 |
Q |
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||||||||| |||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| ||||||| ||| |||||||||||||||| |
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| T |
38218022 |
atagccatcttattttaatttgttatgattctttgattttatatattcctctatatttttttggtgtctattttagatagcacatgatcaaataaatcaa |
38217923 |
T |
|
| Q |
295 |
attctttgta |
304 |
Q |
| |
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|||||||||| |
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| T |
38217922 |
attctttgta |
38217913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 42991500 - 42991666
Alignment:
| Q |
1 |
ctgtctcttccacttccttctctgattctgcattgcaaagcaatgagcttgatgcttatggtagaagaagattgagatgggttcagaaatactttatgat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || || ||||| |
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| T |
42991500 |
ctgtctcttccacttccttctctgattctgcattgcagagcaacgagcttgatgcttatggtagaagaagattgagatgggttcagaagtatttcatgat |
42991599 |
T |
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| Q |
101 |
ctataattactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaagg |
167 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| ||||| |
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| T |
42991600 |
atataattactgcaacgatcttaagcgatttccacaaggtattcctgctgagtgtaggcgttcaagg |
42991666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 35018213 - 35018348
Alignment:
| Q |
21 |
tctgattctgcattgcaaagcaatgagcttgatgcttatggtagaagaagattgagatgggttcagaaatactttatgatctataattactgcaacgatc |
120 |
Q |
| |
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|||||| ||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| || || || ||||| ||||| || || || |||| |
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| T |
35018213 |
tctgatgctgaatggcaaataaatgagcttgatgcttatggtagaagaagattgagatgggttcaaaagtatttcatgatttataactattgtaatgatc |
35018312 |
T |
|
| Q |
121 |
ttaagcgattcccagaaggtattcctgctgagtgta |
156 |
Q |
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|||||||||||||| ||||| |||||| |||||||| |
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| T |
35018313 |
ttaagcgattcccacaaggtgttcctgttgagtgta |
35018348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 304
Target Start/End: Original strand, 42993602 - 42993697
Alignment:
| Q |
210 |
ttaatttgttatgattcttttattttatatattcctctatatatttt-ggtgtctatcttagataacacgtgatcaaataaatcaaattctttgta |
304 |
Q |
| |
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||||||| |||||||||||| |||| ||| ||||||| ||| |||| ||||||| | ||| |||||| |||| ||||||||||||||||||||| |
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| T |
42993602 |
ttaatttattatgattctttgatttactatcttcctctgtatttttttggtgtctgttttatataacagatgatgaaataaatcaaattctttgta |
42993697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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