View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1933_low_4 (Length: 369)
Name: NF1933_low_4
Description: NF1933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1933_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 21 - 353
Target Start/End: Complemental strand, 3417184 - 3416846
Alignment:
| Q |
21 |
atgaagttgttgacgatgaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtga |
120 |
Q |
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| T |
3417184 |
atgaagttgttgacgataaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtga |
3417085 |
T |
|
| Q |
121 |
taggaagaggaaagtttggaacgacataggaacttgaatc------agaatccgtaaaaagtaaattatttgttctaagcgattccatgagcaagactgg |
214 |
Q |
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| T |
3417084 |
taggaagaggaaagtttggaacgatataggaacttgaatccgaatcagaatccgtaaaaagtaaattatttgttctaagggattccatgagcaagactgg |
3416985 |
T |
|
| Q |
215 |
aaagacagacaaaacattgtatgtgaaattagggatttgaaggctctgggctaagtcattaacccatgggtatgcagagtcggagatgatacaatctggt |
314 |
Q |
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| T |
3416984 |
aaaaacggacaaaacattgtatgtgaaattagggatttgaagcttctgggccaagtcattaacccatgggtatgcagagtcggagatgatacaatctggt |
3416885 |
T |
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| Q |
315 |
ggatcgtttttaatgaaatcctcaatgggtcgatggagg |
353 |
Q |
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| T |
3416884 |
ggatcgtttttaatgaaatcctcaatgggtcgatggagg |
3416846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 12541213 - 12541355
Alignment:
| Q |
24 |
aagttgttgacgatgaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtgatag |
123 |
Q |
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| T |
12541213 |
aagttgttgataatgtagcctgtacttttgaacactgtgtcaagcatcaatcctatgaatttgctgagaacctttgacggtttactgcacatggtgatac |
12541312 |
T |
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| Q |
124 |
gaagaggaaagtttggaacgacataggaacttgaatcagaatc |
166 |
Q |
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| T |
12541313 |
gatgaggaaaatttggaacgacatacgaacttgaatccgaatc |
12541355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 28385862 - 28386007
Alignment:
| Q |
24 |
aagttgttgacgatgaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtga--- |
120 |
Q |
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|||||||||| |||| |||| ||||||||| ||| ||||||||||||| ||||||||| | ||||||||||||||||||||||| |||| ||| | |
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| T |
28385862 |
aagttgttgatgatgtagcctgtacttttgagcaccgtgtcaagcatcattcctatgaacatgctgagaacctttggtggtttactacacaaggtaatat |
28385961 |
T |
|
| Q |
121 |
taggaagaggaaagtttggaacgacataggaacttgaatcagaatc |
166 |
Q |
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| T |
28385962 |
tatcatgatgaagatttggaacgacatatgaacttgaatctgaatc |
28386007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 267 - 353
Target Start/End: Original strand, 13440983 - 13441069
Alignment:
| Q |
267 |
aagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcctcaatgggtcgatggagg |
353 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||||||||||||| || | |||||||||||||||| || ||||||| |
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| T |
13440983 |
aagtcattagcccatgggtatgcggagtcggagatgatacaatctggtggatctttctccatgaaatcctcaatggatccatggagg |
13441069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 261 - 319
Target Start/End: Original strand, 13455611 - 13455669
Alignment:
| Q |
261 |
tgggctaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatc |
319 |
Q |
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| T |
13455611 |
tgggccaagtcattaacccatgggtatgcagcgtcggagatgatacaatctgggggatc |
13455669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 13449146 - 13449219
Alignment:
| Q |
267 |
aagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcctcaat |
340 |
Q |
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| T |
13449146 |
aagtcattaacccatgggtacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatccccaat |
13449219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 13440726 - 13440864
Alignment:
| Q |
22 |
tgaagttgttgacgatgaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtgat |
121 |
Q |
| |
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|||||||||||| ||||| | |||||||||| |||||| ||||||||| | || |||||| || | |||||||| ||||| | ||||| ||| || |
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| T |
13440726 |
tgaagttgttgatgatgagtgctttacttttgagcactgtcccaagcatcatttttaggaatttgctaattacctttggcggttttccgcacaaggttat |
13440825 |
T |
|
| Q |
122 |
aggaagaggaaagtttggaacgacataggaacttgaatc |
160 |
Q |
| |
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| || ||||||| |||||||| ||| ||||||||||||| |
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| T |
13440826 |
acgatgaggaaaatttggaacaacaaaggaacttgaatc |
13440864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 13448912 - 13449033
Alignment:
| Q |
45 |
ttacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtgataggaagaggaaagtttggaacga |
144 |
Q |
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|||||||| | ||| || |||||||||| ||| |||||| ||| || |||||||| ||||| | |||| ||||||| | ||||||| |||||||| | |
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| T |
13448912 |
ttacttttaagcaccgtctcaagcatcattcccatgaatataccgattacctttggcggttttccacacaaggtgatatggtgaggaaaatttggaacaa |
13449011 |
T |
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| Q |
145 |
cataggaacttgaatcagaatc |
166 |
Q |
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| T |
13449012 |
caaaggaacttgaatccgaatc |
13449033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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