View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1933_low_9 (Length: 253)
Name: NF1933_low_9
Description: NF1933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1933_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 39982827 - 39983063
Alignment:
| Q |
1 |
tgagtatgtttgcagatgatagctctggcaatagcaattggtgttggtatacatgctatttatcatcttgcttgtgattttcctcgcattcttcatgcaa |
100 |
Q |
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| T |
39982827 |
tgagtatttttgcagatgatagctctggcaatagcaattggtgttggtatacatgctatttatcatcttgcttgtgattttcctcgcattcttcatgcaa |
39982926 |
T |
|
| Q |
101 |
gcaatgaaaagtacaagctgattgagccttttttcggagagaaaccatcaaattactggcattttgtcaaatcttgggaaggggtaacaggaattctaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982927 |
gcaatgaaaagtacaagctgattgagccttttttcggagagaaaccaacaaattactggcattttgtcaaatcttgggaaggggtaacaggaattctaat |
39983026 |
T |
|
| Q |
201 |
ggttgtgctaatggcaatagcctttacactggccaat |
237 |
Q |
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| T |
39983027 |
ggttgtgctaatggcaatagcctttacactggccaat |
39983063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 44885554 - 44885769
Alignment:
| Q |
9 |
tttgcagatgatagctctggcaatagcaattggtgttggtatacatgctatttatcatcttgcttgtgattttcctcgcattcttcatgcaagcaatgaa |
108 |
Q |
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| T |
44885554 |
tttgcaggtaatagctgtggcagtagcaattggagttggtatacatgctatttatcatcttgcttgcgactttccacgccttcttcatgcaaatagtgaa |
44885653 |
T |
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| Q |
109 |
aagtacaagctgattgagccttttttcggagagaaaccatcaaattactggcattttgtcaaatcttgggaaggggtaacaggaattctaatggttgtgc |
208 |
Q |
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| T |
44885654 |
aagtacaagctcatggaaccattttttggaaagcaagcaacaaattattggcattttgtgaaatcatgggaaggagtaacagggattataatggttgttt |
44885753 |
T |
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| Q |
209 |
taatggcaatagcctt |
224 |
Q |
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|||||||||||||||| |
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| T |
44885754 |
taatggcaatagcctt |
44885769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 44915194 - 44915417
Alignment:
| Q |
10 |
ttgcagatgatagctctggcaatagcaattggtgttggtatacatgctatttatcatcttgcttgtgattttcctcgcattcttcatgcaagcaatgaaa |
109 |
Q |
| |
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|||||| |||| ||| ||||| |||||| ||| ||||||||||||||||||||||||||| |||| || ||||||||| |||||||||||| | ||||| |
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| T |
44915194 |
ttgcaggtgattgctgtggcagtagcaactggagttggtatacatgctatttatcatcttacttgcgactttcctcgccttcttcatgcaaatagtgaaa |
44915293 |
T |
|
| Q |
110 |
agtacaagctgattgagccttttttcggagagaaaccatcaaattactggcattttgtcaaatcttgggaaggggtaacaggaattctaatggttgtgct |
209 |
Q |
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|||||||||| || || || ||||| ||| || ||||| ||| ||| ||||||||||| ||||| |||||||| ||||| || ||| |||||||||| | |
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| T |
44915294 |
agtacaagctcatggaaccattttttggaaagcaaccaacaagttattggcattttgtgaaatcatgggaaggagtaacggggattgtaatggttgtttt |
44915393 |
T |
|
| Q |
210 |
aatggcaatagcctttacactggc |
233 |
Q |
| |
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|||| |||||||||| |||||||| |
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| T |
44915394 |
aatgacaatagccttcacactggc |
44915417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 44898938 - 44899153
Alignment:
| Q |
9 |
tttgcagatgatagctctggcaatagcaattggtgttggtatacatgctatttatcatcttgcttgtgattttcctcgcattcttcatgcaagcaatgaa |
108 |
Q |
| |
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||||||||| |||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | || |||| || | | |||| |
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| T |
44898938 |
tttgcagataatagctgttgcaatagcaattggagttggtatacatgctatttatcatcttgcttgtgactttcctagtcttattcacgcgaatagtgaa |
44899037 |
T |
|
| Q |
109 |
aagtacaagctgattgagccttttttcggagagaaaccatcaaattactggcattttgtcaaatcttgggaaggggtaacaggaattctaatggttgtgc |
208 |
Q |
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|||||| |||| || || || ||||| ||| || || || ||| ||| ||||||||||| ||||| |||||||| |||||||| ||| |||||||||| |
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| T |
44899038 |
aagtacgagctcatggaaccattttttggaaagcaagcaacaagttattggcattttgtgaaatcatgggaaggagtaacagggattataatggttgttt |
44899137 |
T |
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| Q |
209 |
taatggcaatagcctt |
224 |
Q |
| |
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||||| |||| ||||| |
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| T |
44899138 |
taatgacaattgcctt |
44899153 |
T |
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