View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19340_low_1 (Length: 576)
Name: NF19340_low_1
Description: NF19340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19340_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 2 - 560
Target Start/End: Original strand, 33032214 - 33032775
Alignment:
| Q |
2 |
gggtagattattctatgtctacacaaggattcacctcagtgagtatgaaattctgttgtgcaccacccgccccagattcttgtcgaaaactacctggcca |
101 |
Q |
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| T |
33032214 |
gggtagatttttctatgtctacacaaggattcacctcagtgagtatgaaattctgttgagcaccacccgccccggattcttgtcgaaaactacctggcca |
33032313 |
T |
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| Q |
102 |
catcaactttgactcctcgtcttccaagaatattggaaatccgacgcaaccttgttgctcgaatctcatattatttctcacctcatga---tgaggccta |
198 |
Q |
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| T |
33032314 |
catcaactttgactcctcgtcttccaagaatattggaaatccgacgcaaccttgttgctcgaatctcatattatttctcacctcatgatgatgaggccta |
33032413 |
T |
|
| Q |
199 |
attggtgttggtgagaaaccatagtgcattgaagagtgtgcttttatccctaatgacctaaaagaaccatgcaaaggtaaagatgctaaactagcattat |
298 |
Q |
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| T |
33032414 |
attgttgttggtgagaaaccatagtgcattgaagagtgtgcttttatccctaatgacctaaaagaaccatgcaaaggtaaagatgctaaactagcattat |
33032513 |
T |
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| Q |
299 |
acctatcagaaaacattcccattctcatagctctttttgctaatgttctttctcttttatgtgcattttggtgtccaccaagagcttgagaactgaaaaa |
398 |
Q |
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| T |
33032514 |
acctatcagaaaacattcccattctcatagctctttttgctaatgttctttctcttttatgtgcattttggtgtccaccaagagcttgagaactgaaaaa |
33032613 |
T |
|
| Q |
399 |
ctttctctgacagtaattgcatgagaaaactcttggaattgttgctgttgcaggttcattgctgctctcagaagtgcttgaaagtgagaatcctattgaa |
498 |
Q |
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| T |
33032614 |
ctttctctgacagtaattgcatgagaaaactcttggaattgttgctgttgcaggttcattactgctctcagaagtgcttgaaagtgagaatcctattgaa |
33032713 |
T |
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| Q |
499 |
tttgaatctcttgttgttggtatctcactgttcttgaaatttagacttaagtcaagagatat |
560 |
Q |
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| T |
33032714 |
tttgaatctcttgttgttggtatctcactgttcttgaaatttagacttaggtcaagagatat |
33032775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 319 - 432
Target Start/End: Original strand, 29335294 - 29335407
Alignment:
| Q |
319 |
attctcatagctctttttgctaatgttctttctcttttatgtgcattttggtgtccaccaagagcttgagaactgaaaaactttctctgacagtaattgc |
418 |
Q |
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| T |
29335294 |
attcgcatagctcgctttgctaatgttctttctctcttgtgtgcattttgatgaccaccaagtgcctgagagctgtaaaatttgcgccgacagtaattgc |
29335393 |
T |
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| Q |
419 |
atgagaaaactctt |
432 |
Q |
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| T |
29335394 |
aagagaaaactctt |
29335407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 45217859 - 45217957
Alignment:
| Q |
329 |
ctctttttgctaatgttctttctcttttatgtgcattttggtgtccaccaagagcttgagaactgaaaaactttctctgacagtaattgcatgagaaaa |
427 |
Q |
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| T |
45217859 |
ctctttttgccatagttctttctcttttgtgtgcattttggtgtccaccaagtgcctgtgaactataaaactttctttggcaatagttgcatgagaaaa |
45217957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 431
Target Start/End: Original strand, 687103 - 687176
Alignment:
| Q |
358 |
tgtgcattttggtgtccaccaagagcttgagaactgaaaaactttctctgacagtaattgcatgagaaaactct |
431 |
Q |
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| T |
687103 |
tgtgcattttggtgtcctccaagtgcttgagaactataaaactttctttggcagtagttgcatgaaaaaactct |
687176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 431
Target Start/End: Original strand, 704470 - 704543
Alignment:
| Q |
358 |
tgtgcattttggtgtccaccaagagcttgagaactgaaaaactttctctgacagtaattgcatgagaaaactct |
431 |
Q |
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| T |
704470 |
tgtgcattttggtgtcctccaagtgcttgagaactataaaactttctttggcagtagttgcatgaaaaaactct |
704543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 361 - 425
Target Start/End: Complemental strand, 53465365 - 53465301
Alignment:
| Q |
361 |
gcattttggtgtccaccaagagcttgagaactgaaaaactttctctgacagtaattgcatgagaa |
425 |
Q |
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| T |
53465365 |
gcattttggtgtcctcccaaagcttgagagctataaaactttctttgacaatagttgcatgagaa |
53465301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 2867119 - 2867167
Alignment:
| Q |
329 |
ctctttttgctaatgttctttctcttttatgtgcattttggtgtccacc |
377 |
Q |
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|||||||||||| || ||| |||||||| || ||||||||||||||||| |
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| T |
2867119 |
ctctttttgctattgatctctctcttttgtgagcattttggtgtccacc |
2867167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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