View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19340_low_2 (Length: 573)
Name: NF19340_low_2
Description: NF19340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19340_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 487
Target Start/End: Original strand, 2837082 - 2837544
Alignment:
| Q |
14 |
tagcaaaggtacacacgaggctctgtgcggcttaccacataggagcacacctagagttaatatccgtaattgaagccatccttaacgggttatgtacatc |
113 |
Q |
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| T |
2837082 |
tagcaaaggtgcacacgaggctctgtgcggcttaccacataggagcacacctagagttaatatccgtaattgaagccatccttaacgagttatgtacatc |
2837181 |
T |
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| Q |
114 |
acgacacaaatcagggagacaatcatcaacctcctcgcctatataagcgcaactcagtgtca----caaggtactgttcattcaccaccttttcgcacaa |
209 |
Q |
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| T |
2837182 |
acgccacaaatcagggagacaatcatcaacctcctcgcctatataagcgcaactcagtgtcacactcaaggtactgttcattcaccaccttttcgcacaa |
2837281 |
T |
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| Q |
210 |
atccacctctttttgatacttacttgagcgttgtactactagcatgtctacaagcaccattctcctctgctatagaagattgctttgctccacgcgcgac |
309 |
Q |
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| T |
2837282 |
atccacctctttttgatacttacttgagcgttgtactactagcatgtctacaagcaccattctcctctgccatagaagattgctttgctcca-------- |
2837373 |
T |
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| Q |
310 |
actgcgcaccaccgcaacatcaactatttctataagagaaccaccactacatctccttgctatgtaccggacataccataannnnnnnnnnnnnnatacc |
409 |
Q |
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| T |
2837374 |
--tgcgcaccaccgcaacaacaactatttctataagagaaccaccactacatctccttgctatgcaccggacataccataatttttttttt-----tacc |
2837466 |
T |
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| Q |
410 |
aaagttataaattaaatactataaaagctggaatctcttaaatatgatagtttaataagcgacacaacttggttttag |
487 |
Q |
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| T |
2837467 |
aatgttataaattaaatactatagaagctggaatctattaaatatgatagtttaataagcgacacaacttggttttag |
2837544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 484 - 555
Target Start/End: Original strand, 2838453 - 2838524
Alignment:
| Q |
484 |
ttagttttaaggaaaacttggttctttacaagccaagtagtctttatataacacgttcttatatagcctttg |
555 |
Q |
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| T |
2838453 |
ttagttttaaggaaaacttggttctttacaagccaattagtctttatataactcgttcttatatagcctttg |
2838524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 53020412 - 53020469
Alignment:
| Q |
186 |
ttcattcaccaccttttcgcacaaatccacctctttt-tgatacttacttgagcgttg |
242 |
Q |
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| T |
53020412 |
ttcattcaccacttttctgcacaaatccacctcttttgtgatactgacttgagcgttg |
53020469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 10730806 - 10730843
Alignment:
| Q |
138 |
atcaacctcctcgcctatataagcgcaactcagtgtca |
175 |
Q |
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| T |
10730806 |
atcaacctcctcgcctatataagtgcgactcagtgtca |
10730843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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