View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19340_low_3 (Length: 452)
Name: NF19340_low_3
Description: NF19340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19340_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 13 - 434
Target Start/End: Original strand, 32844591 - 32845012
Alignment:
| Q |
13 |
attctccggtcaccttgaaaaccaataatattccattgttgatagtttctcatcccgccaatgtcttcatcggagcctaagtacgacaccccaccggccc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32844591 |
attctccggtcaccttgaaaaccaataatattccattgttgatagtttctcatcccgccaatgtcttcatcggagcctaagtacgacaccccaccggccc |
32844690 |
T |
|
| Q |
113 |
caacatacaagaccccaccggctctagtagccttcaccctcaccgtcctcatcttatgctttgtggctttcagcgtcgtgtatgtttgcaagtattgttt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32844691 |
caacatacaagaccccaccggctctagtagccttcaccctcaccgtcctcatcttatgctttgtggctttcagcgttgtgtatgtttgcaagtattgttt |
32844790 |
T |
|
| Q |
213 |
tgctggccttttccacacttgggccttgcaacgcacgacctcaggttccctcgttcgtctctcacctgataggtcaccccctagaggactcgataatacc |
312 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32844791 |
tgctggctttttccacacttgggccttgcaacgcacgacctcaggttccctcgttcgtctctcacctgataggtcaccctctagaggactcgataatacc |
32844890 |
T |
|
| Q |
313 |
cttctagaaaaattccccactttcctctactcctccgtgaaagaccttcgcaaggaaaagagttatagcttagaatgtgccatttgcttgatagagtttg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32844891 |
cttctagaaaaattccccactttcctctactcctccgtgaaagaccttcgtaaggaaaagagttatagcttagaatgtgccatttgcttgctagagtttg |
32844990 |
T |
|
| Q |
413 |
atgatgatagcatgcttcgtct |
434 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
32844991 |
atgatgatagcatgcttcgtct |
32845012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 26 - 434
Target Start/End: Original strand, 27744924 - 27745332
Alignment:
| Q |
26 |
cttgaaaaccaataatattccattgttgatagtttctcatcccgccaatgtcttcatcggagcctaagtacgacaccccaccggccccaacatacaagac |
125 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||| || ||||||||| ||| || ||||||||||| |||||||||| ||| || | ||||| |
|
|
| T |
27744924 |
cttgaaaaccaataacagtccattgttgatagtttctcaattcgacaatgtctttatcagaatctaagtacgaccccccaccggctccagcacataagac |
27745023 |
T |
|
| Q |
126 |
cccaccggctctagtagccttcaccctcaccgtcctcatcttatgctttgtggctttcagcgtcgtgtatgtttgcaagtattgttttgctggccttttc |
225 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||| ||||||||||||| ||||| ||| ||||| |
|
|
| T |
27745024 |
cccaccggcactagtagccttcaccctcaccgtcctcatcctatgctttgtggctttcagcattgtgtatctttgcaagtattgctttgcaggcattttc |
27745123 |
T |
|
| Q |
226 |
cacacttgggccttgcaacgcacgacctcaggttccctcgttcgtctctcacctgataggtcaccccctagaggactcgataatacccttctagaaaaat |
325 |
Q |
| |
|
|| | ||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| || | || |
|
|
| T |
27745124 |
catatgtgggccttgcatcgcacggcctcaggatccctcgttcgtctctcacctgataggtcaccccctagaggactcaacaatacccttataaatggat |
27745223 |
T |
|
| Q |
326 |
tccccactttcctctactcctccgtgaaagaccttcgcaaggaaaagagttatagcttagaatgtgccatttgcttgatagagtttgatgatgatagcat |
425 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||| ||||| |||||||||||||| ||||||||| ||||||| || || |||||||| |
|
|
| T |
27745224 |
tccccactttcctctactctgatgtgaaagaccaccgcaaggaaaaaagttacagcttagaatgtgctatttgcttgctagagttcgaggacgatagcat |
27745323 |
T |
|
| Q |
426 |
gcttcgtct |
434 |
Q |
| |
|
||||||||| |
|
|
| T |
27745324 |
gcttcgtct |
27745332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University