View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19340_low_4 (Length: 413)

Name: NF19340_low_4
Description: NF19340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19340_low_4
NF19340_low_4
[»] chr4 (4 HSPs)
chr4 (18-403)||(52187677-52188062)
chr4 (130-213)||(36627264-36627347)
chr4 (124-213)||(35969266-35969355)
chr4 (253-294)||(36590341-36590382)
[»] chr2 (4 HSPs)
chr2 (88-362)||(38990022-38990296)
chr2 (122-349)||(43862989-43863216)
chr2 (122-352)||(43866458-43866689)
chr2 (128-352)||(43874140-43874361)
[»] chr3 (11 HSPs)
chr3 (123-385)||(777079-777343)
chr3 (60-207)||(7034096-7034239)
chr3 (109-212)||(8032346-8032449)
chr3 (61-213)||(481864-482017)
chr3 (130-201)||(7119797-7119868)
chr3 (101-166)||(13489997-13490062)
chr3 (130-201)||(7103232-7103303)
chr3 (131-214)||(7127009-7127092)
chr3 (109-144)||(24104122-24104157)
chr3 (61-187)||(476907-477028)
chr3 (253-293)||(1187644-1187684)
[»] chr7 (5 HSPs)
chr7 (69-211)||(32414567-32414707)
chr7 (130-199)||(30597242-30597311)
chr7 (124-216)||(6890132-6890224)
chr7 (137-188)||(6849709-6849760)
chr7 (155-203)||(6845153-6845201)
[»] scaffold0438 (1 HSPs)
scaffold0438 (109-207)||(6268-6369)
[»] chr8 (5 HSPs)
chr8 (109-207)||(26291886-26291987)
chr8 (109-207)||(26305143-26305244)
chr8 (109-207)||(26338498-26338599)
chr8 (130-214)||(27700899-27700983)
chr8 (130-210)||(35336714-35336794)
[»] chr5 (8 HSPs)
chr5 (106-205)||(7022955-7023054)
chr5 (253-290)||(28092163-28092200)
chr5 (130-210)||(25070180-25070260)
chr5 (130-210)||(25128155-25128235)
chr5 (130-203)||(25216877-25216950)
chr5 (130-203)||(25281032-25281105)
chr5 (130-178)||(25102532-25102580)
chr5 (130-178)||(25161626-25161674)
[»] chr1 (1 HSPs)
chr1 (130-203)||(28927456-28927529)
[»] scaffold0210 (1 HSPs)
scaffold0210 (137-173)||(15277-15313)


Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 52187677 - 52188062
Alignment:
Q  18 tcaaatactatcaaggtattttatattgtaccattgatgcttctttttatattgtatttataatttttgatcaaaaataggacttgcattaaactgatcg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52187677 tcaaatactatcaaggtattttatattgtaccattgatgcttctttttatattgtatttataatttttgatcaaaaataggacttgcattaaactgatcg 52187776  T
Q  118 taatacttcttgattgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaataaaaacgg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52187777 taatacttcttgattgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttgaagtcactgaaaataaaaacgg 52187876  T
Q  218 accgaacttcatctatagatgacgacatggttggatttttgattcaaaactcaccctcggcaaaagttgacatcatacgtttataaaggtgaaatgtaca 317  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52187877 accgaacttcatctatagatgacgacatggtgggatttttgattcaaaactcaccctcggcaaaagttgacatcataggtttataaaggtgaaatgtaca 52187976  T
Q  318 ttcaacaacattttaaagatagattgattgatttagtaattttacttttgcatccttttttgtttctacttcccacgatgtctctg 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52187977 ttcaacaacattttaaagatagattgattgatttagtaattttacttttgcatccttttttgtttctacttcccacgatgtctctg 52188062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 36627347 - 36627264
Alignment:
Q  130 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaataaaa 213  Q
    ||||||||| |||| || |||||||||||||||||| |||||||| ||| ||| ||  ||| ||| |||||| || ||||||||    
T  36627347 attgcttagattctctccttagttcctgatttattggaggttgagctcccttctttcggtaacttgaagtcaatggaaataaaa 36627264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 35969266 - 35969355
Alignment:
Q  124 ttcttgattgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaataaaa 213  Q
    ||||||| || |||| |||| || |||||||||||| ||||  |||||||| ||||||| ||||||| ||| |||||  || ||||||||    
T  35969266 ttcttgactgtttagattctctccttagttcctgatatattagaggttgagctccattctttgtgtaacttgaagtcgatggaaataaaa 35969355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 36590382 - 36590341
Alignment:
Q  253 tttttgattcaaaactcaccctcggcaaaagttgacatcata 294  Q
    |||||||||||||||||||| || ||| ||||||||||||||    
T  36590382 tttttgattcaaaactcaccgtcagcagaagttgacatcata 36590341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 4e-82; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 88 - 362
Target Start/End: Original strand, 38990022 - 38990296
Alignment:
Q  88 tcaaaaataggacttgcattaaactgatcgtaatacttcttgattgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgt 187  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| ||||| ||||||    
T  38990022 tcaaaaatatgacttgcattaaactgatcgtaatacttcctgattgcttaggttctttctttatttcctgatttattgaaggctgagctccatcccttgt 38990121  T
Q  188 gtaccttaaagtcactgaaaataaaaacggaccgaacttcatctatagatgacgacatggttggatttttgattcaaaactcaccctcggcaaaagttga 287  Q
     || ||| ||||| ||||||||| ||||||||| |||| ||||||||  | | ||  |||| | |||||||||||||||||||||||||||||| |||||    
T  38990122 ataacttgaagtccctgaaaatagaaacggaccaaactacatctatatgtaatgatgtggtagaatttttgattcaaaactcaccctcggcaaaggttga 38990221  T
Q  288 catcatacgtttataaaggtgaaatgtacattcaacaacattttaaagatagattgattgatttagtaattttac 362  Q
    |||||||||||| ||||||| ||  |||||||| ||||||||||||| |||| |||||||||||| |||||||||    
T  38990222 catcatacgtttgtaaaggtaaaccgtacattcgacaacattttaaaaataggttgattgatttaataattttac 38990296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 122 - 349
Target Start/End: Complemental strand, 43863216 - 43862989
Alignment:
Q  122 acttcttgattgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaataaaaacggaccg 221  Q
    ||||| ||||||||||||||||||| ||||||| || |||||||||||| ||| ||| ||||||||||| ||| |||||||||||||| |||  || |      
T  43863216 acttcctgattgcttaggttctttccttagttcgtggtttattgaaggtagagctcccttccttgtgtaacttgaagtcactgaaaattaaagtggtcat 43863117  T
Q  222 aacttcatctatagatgacgacatggttggatttttgattcaaaactcaccctcggcaaaagttgacatcatacgtttataaaggtgaaatgtacattca 321  Q
    | ||||||| |||  |||||| ||||| |  |||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| ||||||    
T  43863116 accttcatcgatacgtgacgaaatggtagactttttgattcaaaactcaccctcgacaaaggttgacatcgtacgtttataaaggtgaaatgtgcattca 43863017  T
Q  322 acaacattttaaagatagattgattgat 349  Q
    || |||||||||| ||| |||| |||||    
T  43863016 acgacattttaaatataaattgtttgat 43862989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 122 - 352
Target Start/End: Complemental strand, 43866689 - 43866458
Alignment:
Q  122 acttcttgattgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaataaaaacggaccg 221  Q
    ||||| ||||||||||||| ||||| ||||||| ||||||||||||||||||||||| |||||||| || ||| ||||| |||||| ||||||||  |      
T  43866689 acttcctgattgcttaggtgctttccttagttcgtgatttattgaaggttgagttcccttccttgtttaacttgaagtcgctgaaattaaaaacgcccat 43866590  T
Q  222 aacttcatctatagatgacgacatggttggatttttgattcaaaactcaccctcggcaaaagttgacatcatacgtttataaaggtg-aaatgtacattc 320  Q
      ||||||||| |  |||| | |  || |  |||||||||||||||||||||||| |||| ||||||||||||| |||||||||||| |||||| |||||    
T  43866589 gccttcatctaaacttgacaaaagagtggactttttgattcaaaactcaccctcgacaaaggttgacatcatacatttataaaggtgaaaatgtgcattc 43866490  T
Q  321 aacaacattttaaagatagattgattgattta 352  Q
    |||||||||||||| |||||||| ||| ||||    
T  43866489 aacaacattttaaaaatagattgtttgcttta 43866458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 128 - 352
Target Start/End: Complemental strand, 43874361 - 43874140
Alignment:
Q  128 tgattgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaataaaaacggaccgaacttc 227  Q
    ||||||||||||||||| | ||||||| | |||| |||| ||| ||| ||| ||||||||||| ||| ||||||| |||||| ||| ||| |  | ||||    
T  43874361 tgattgcttaggttcttaccttagttcgtaatttgttgacggtagagctcctttccttgtgtaacttgaagtcaccgaaaattaaagcggccataccttc 43874262  T
Q  228 atctatagatgacgacatggttggatttttgattcaaaactcaccctcggcaaaagttgacatcatacgtttataaaggtgaaatgtacattcaacaaca 327  Q
    ||| |||  |||||| ||||| |  |||||||||||||||||||||| | |||| ||||||||| |||||||||||||||||||||| ||||   |||||    
T  43874261 atcgatacgtgacgaaatggtggactttttgattcaaaactcacccttgacaaaggttgacatcctacgtttataaaggtgaaatgtgcatt---caaca 43874165  T
Q  328 ttttaaagatagattgattgattta 352  Q
    ||||||| |||||||| ||||||||    
T  43874164 ttttaaaaatagattgtttgattta 43874140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 123 - 385
Target Start/End: Complemental strand, 777343 - 777079
Alignment:
Q  123 cttcttgattgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaataaaaacggaccga 222  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||  ||  || |||||||| ||| |||||| |||||||||||||  ||| |    
T  777343 cttcttgattgcttaggttctttccttggttcctgatttattgaacgttgaactctcttacttgtgtaacttgaagtcattgaaaataaaaacataccta 777244  T
Q  223 acttcatctatagatgacgacatggttggatttttgattcaaaactcaccctcggcaaaagttgacatcatac--gtttata-aaggtgaaatgtacatt 319  Q
     ||||||| |||  |||||  ||| | |  || ||||||||||||||||| |||||||| ||||| ||| |||  | |  || ||||||||| || ||||    
T  777243 tcttcatcaatacctgacggaatgatagacttattgattcaaaactcaccatcggcaaaggttgatatcttacaagatattataaggtgaaaggtgcatt 777144  T
Q  320 caacaacattttaaagatagattgattgatttagtaattttacttttgcatccttttttgtttcta 385  Q
    ||||||| |||||||||||||||| ||| ||||||||| ||| |||||||||||| | ||||||||    
T  777143 caacaac-ttttaaagatagattgtttggtttagtaatgttatttttgcatccttctctgtttcta 777079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 60 - 207
Target Start/End: Original strand, 7034096 - 7034239
Alignment:
Q  60 ctttttatattgtatttataatttttgatcaaaaataggacttgcattaaactgatcgtaatacttcttgattgcttaggttctttctttagttcctgat 159  Q
    ||||||||||||| ||||||| |||| |||||   || ||||||||||||||||||| ||||||||| |||| |||||||||||||| |||||||||||     
T  7034096 ctttttatattgtgtttataaatttt-atcaa---tacgacttgcattaaactgatcctaatacttcctgatggcttaggttctttccttagttcctgaa 7034191  T
Q  160 ttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaa 207  Q
     ||| |||||||||| | | |||||||  || ||| |||| |||||||    
T  7034192 ctatcgaaggttgagcttccttccttgcataacttgaagttactgaaa 7034239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 8032449 - 8032346
Alignment:
Q  109 aactgatcgtaatacttcttgattgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaa 208  Q
    |||||||| ||||||||| ||||||||||||||||||| | |  |  ||||||||||| ||||||||||| ||||||| ||| ||| ||||||||||||     
T  8032449 aactgatcctaatacttcatgattgcttaggttctttcctgaaattatgatttattgacggttgagttcccttccttgcgtaacttgaagtcactgaaat 8032350  T
Q  209 taaa 212  Q
    ||||    
T  8032349 taaa 8032346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 213
Target Start/End: Original strand, 481864 - 482017
Alignment:
Q  61 tttttatattgtatttataatttttgatcaaaaataggacttgcattaaactgatcgtaatacttcttgattgctta--ggttctttctttagttcctga 158  Q
    |||||| ||| ||||||||| |||| |||||||||| ||||||||    ||||||| |||||||| ||| |||||||  || | |||  ||| |||||||    
T  481864 tttttagattatatttataaatttttatcaaaaatatgacttgca----actgatcctaatacttgttgtttgcttataggatattttcttatttcctga 481959  T
Q  159 tttattgaaggttgagttccattccttgt---gtaccttaaagtcactgaaaataaaa 213  Q
    |||||||||| || || ||| ||||||||   ||| ||| ||||||||||||||||||    
T  481960 tttattgaagattaagctcccttccttgttgtgtaacttgaagtcactgaaaataaaa 482017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 7119797 - 7119868
Alignment:
Q  130 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtca 201  Q
    |||||||||||||| || |||||||||||||||||||||||| || | | ||||||||||| ||| ||||||    
T  7119797 attgcttaggttctctccttagttcctgatttattgaaggttaagctaccttccttgtgtaacttgaagtca 7119868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 13490062 - 13489997
Alignment:
Q  101 ttgcattaaactgatcgtaatacttcttgattgcttaggttctttctttagttcctgatttattga 166  Q
    |||||||||||||||  ||  |||||||| ||| |||||||||||| |||||||| ||||||||||    
T  13490062 ttgcattaaactgattctacaacttcttgtttgtttaggttctttccttagttccagatttattga 13489997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 7103303 - 7103232
Alignment:
Q  130 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtca 201  Q
    ||||||||||| || || |||||||| ||||| ||||||||| | |||||||||||| ||| ||| ||||||    
T  7103303 attgcttaggtcctctccttagttccggatttgttgaaggttaaattccattccttgcgtaacttgaagtca 7103232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 7127009 - 7127092
Alignment:
Q  131 ttgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaataaaaa 214  Q
    |||| |||||||| || |||||||||| ||| ||||||||| |  ||||||||||| ||| ||| |||||||||| | ||||||    
T  7127009 ttgcataggttctctccttagttcctggtttgttgaaggttaaactccattccttgcgtaacttgaagtcactgagagtaaaaa 7127092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 144
Target Start/End: Complemental strand, 24104157 - 24104122
Alignment:
Q  109 aactgatcgtaatacttcttgattgcttaggttctt 144  Q
    |||||||| |||||||||||||||||||||||||||    
T  24104157 aactgatcctaatacttcttgattgcttaggttctt 24104122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 187
Target Start/End: Original strand, 476907 - 477028
Alignment:
Q  61 tttttatattgtatttataatttttgatcaaaaataggacttgcattaaactgatcgtaatacttcttgattgcttaggttctttctttagttcctgatt 160  Q
    |||||| ||||||||||||| |||| || ||||||| ||||||||    ||||||| |||||  ||||| ||| ||||| |||||   |  |||||||||    
T  476907 tttttagattgtatttataagtttt-ataaaaaatatgacttgca----actgatcctaatagatcttgtttgtttaggatcttttagtgtttcctgatt 477001  T
Q  161 tattgaaggttgagttccattccttgt 187  Q
    ||||||||||| || ||| ||||||||    
T  477002 tattgaaggttaagctcccttccttgt 477028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 1187644 - 1187684
Alignment:
Q  253 tttttgattcaaaactcaccctcggcaaaagttgacatcat 293  Q
    |||||| |||||||||||||||||||||| ||| |||||||    
T  1187644 tttttgcttcaaaactcaccctcggcaaaggttcacatcat 1187684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 69 - 211
Target Start/End: Original strand, 32414567 - 32414707
Alignment:
Q  69 ttgtatttataatttttgatcaaaaataggacttgcattaaactgatcgtaatacttcttgattgcttaggttctttctttagttcctgatttattgaag 168  Q
    ||||||| |||| ||||| ||||||||| || |||||| ||| ||||| |||| |||| |||||| |||||||||||| || ||||||||||||||||||    
T  32414567 ttgtattaataaattttg-tcaaaaatatgatttgcat-aaattgatcctaattcttcctgattgattaggttctttccttggttcctgatttattgaag 32414664  T
Q  169 gttgagttccattccttgtgtaccttaaagtcactgaaaataa 211  Q
    ||  |||| | ||||||||||| ||| ||||||||||||||||    
T  32414665 gtgaagttgccttccttgtgtaacttgaagtcactgaaaataa 32414707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 30597311 - 30597242
Alignment:
Q  130 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagt 199  Q
    |||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  30597311 attgattaggttctctcgttagttcctgatttattgaaggttgagttccattccttgtgtaacttgaagt 30597242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 6890132 - 6890224
Alignment:
Q  124 ttcttgattgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaataaaaacg 216  Q
    |||||||||| | ||||||| ||   ||||||||||||||||||||||||||| ||||||||||||| ||| |||||||| | | ||||||||    
T  6890132 ttcttgattgatcaggttctctcgaaagttcctgatttattgaaggttgagtttcattccttgtgtagcttgaagtcacttagagtaaaaacg 6890224  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 6849709 - 6849760
Alignment:
Q  137 aggttctttctttagttcctgatttattgaaggttgagttccattccttgtg 188  Q
    ||||||| || |||||||||||||||||||||||||| ||||||||||||||    
T  6849709 aggttctctccttagttcctgatttattgaaggttgaattccattccttgtg 6849760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 6845153 - 6845201
Alignment:
Q  155 ctgatttattgaaggttgagttccattccttgtgtaccttaaagtcact 203  Q
    ||||||||||||||||||||||||||||||||||||  || ||||||||    
T  6845153 ctgatttattgaaggttgagttccattccttgtgtaatttgaagtcact 6845201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 109 - 207
Target Start/End: Original strand, 6268 - 6369
Alignment:
Q  109 aactgatcgtaatacttcttgattgcttaggttctttctttagttcctga---tttattgaaggttgagttccattccttgtgtaccttaaagtcactga 205  Q
    |||||||| ||||||||| ||||||||||||||||||| |  | || |||   ||||||||||||||| |||| ||||||||||| ||| ||||||||||    
T  6268 aactgatcctaatacttcatgattgcttaggttctttcctacgctcatgacgatttattgaaggttgacttcccttccttgtgtaacttgaagtcactga 6367  T
Q  206 aa 207  Q
    ||    
T  6368 aa 6369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 109 - 207
Target Start/End: Original strand, 26291886 - 26291987
Alignment:
Q  109 aactgatcgtaatacttcttgattgcttaggttctttctttagttcctga---tttattgaaggttgagttccattccttgtgtaccttaaagtcactga 205  Q
    |||||||| ||||||||| ||||||||||||||||||| |  | || |||   ||||||||||||||| |||| ||||||||||| ||| ||||||||||    
T  26291886 aactgatcctaatacttcatgattgcttaggttctttcctacgctcatgaggatttattgaaggttgacttcccttccttgtgtaacttgaagtcactga 26291985  T
Q  206 aa 207  Q
    ||    
T  26291986 aa 26291987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 109 - 207
Target Start/End: Original strand, 26305143 - 26305244
Alignment:
Q  109 aactgatcgtaatacttcttgattgcttaggttctttctttagttcctga---tttattgaaggttgagttccattccttgtgtaccttaaagtcactga 205  Q
    |||||||| ||||||||| ||||||||||||||||||| |  | || |||   ||||||||||||||| |||| ||||||||||| ||| ||||||||||    
T  26305143 aactgatcctaatacttcatgattgcttaggttctttcctacgctcatgaggatttattgaaggttgacttcccttccttgtgtaacttgaagtcactga 26305242  T
Q  206 aa 207  Q
    ||    
T  26305243 aa 26305244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 109 - 207
Target Start/End: Original strand, 26338498 - 26338599
Alignment:
Q  109 aactgatcgtaatacttcttgattgcttaggttctttctttagttcctga---tttattgaaggttgagttccattccttgtgtaccttaaagtcactga 205  Q
    |||||||| ||||||||| ||||||||||||||||||| |  | || |||   ||||||||||||||| |||| ||||||||||| ||| ||||||||||    
T  26338498 aactgatcctaatacttcatgattgcttaggttctttcctacgctcatgaggatttattgaaggttgacttcccttccttgtgtaacttgaagtcactga 26338597  T
Q  206 aa 207  Q
    ||    
T  26338598 aa 26338599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 214
Target Start/End: Complemental strand, 27700983 - 27700899
Alignment:
Q  130 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaataaaaa 214  Q
    |||||||||||||| ||  ||||||||||||||||||||||||||||   |||||| |||| ||| ||||| |||||| ||||||    
T  27700983 attgcttaggttctctccgtagttcctgatttattgaaggttgagttttcttccttatgtaacttgaagtcgctgaaagtaaaaa 27700899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 35336714 - 35336794
Alignment:
Q  130 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaata 210  Q
    |||||||||||||| || |||||||||||||||||| ||||| || ||| ||| ||||||| ||| |||||| || |||||    
T  35336714 attgcttaggttctctccttagttcctgatttattggaggttaagctcccttctttgtgtaacttgaagtcattggaaata 35336794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 7022955 - 7023054
Alignment:
Q  106 ttaaactgatcgtaatacttcttgattgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactga 205  Q
    |||||| |||| |||| | |||||||| ||||||||||||| ||||||||| | ||||||| || |||| ||| ||||||||||| ||| ||||||||||    
T  7022955 ttaaaccgatcctaattcgtcttgatttcttaggttctttccttagttcctaacttattgatggctgagctcccttccttgtgtaacttgaagtcactga 7023054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 28092163 - 28092200
Alignment:
Q  253 tttttgattcaaaactcaccctcggcaaaagttgacat 290  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  28092163 tttttgattcaaaactcaccctcggcaaaggttgacat 28092200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 25070180 - 25070260
Alignment:
Q  130 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaata 210  Q
    |||| ||||||||| || |||||||| ||||| |||| ||||||||||| | |||||| || ||| |||||||| ||||||    
T  25070180 attgattaggttctctcattagttccggatttgttgacggttgagttccctaccttgtataacttgaagtcacttaaaata 25070260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 25128155 - 25128235
Alignment:
Q  130 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcactgaaaata 210  Q
    |||| ||||||||| || |||||||| ||||| |||| ||||||||||| | |||||| || ||| |||||||| ||||||    
T  25128155 attgattaggttctctcattagttccggatttgttgacggttgagttccctaccttgtataacttgaagtcacttaaaata 25128235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 25216877 - 25216950
Alignment:
Q  130 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcact 203  Q
    |||| ||||||||| ||  |||||||  ||||||||||||||||||||| | |||||| || ||| ||||||||    
T  25216877 attgattaggttctctccctagttccaaatttattgaaggttgagttccctaccttgtataacttgaagtcact 25216950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 25281032 - 25281105
Alignment:
Q  130 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcact 203  Q
    |||| ||||||||| ||  |||||||  ||||||||||||||||||||| | |||||| || ||| ||||||||    
T  25281032 attgattaggttctctccctagttccaaatttattgaaggttgagttccctaccttgtataacttgaagtcact 25281105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 25102532 - 25102580
Alignment:
Q  130 attgcttaggttctttctttagttcctgatttattgaaggttgagttcc 178  Q
    |||| ||||||||| ||  |||||||| |||||||||||||||||||||    
T  25102532 attgattaggttctctccctagttcctaatttattgaaggttgagttcc 25102580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 25161626 - 25161674
Alignment:
Q  130 attgcttaggttctttctttagttcctgatttattgaaggttgagttcc 178  Q
    |||| ||||||||| ||  |||||||| |||||||||||||||||||||    
T  25161626 attgattaggttctctccctagttcctaatttattgaaggttgagttcc 25161674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 28927529 - 28927456
Alignment:
Q  130 attgcttaggttctttctttagttcctgatttattgaaggttgagttccattccttgtgtaccttaaagtcact 203  Q
    |||| |||||||||  | ||| ||||||||||||| |||||||||||||||||||||||||  || ||||||||    
T  28927529 attgattaggttctcaccttaattcctgatttattcaaggttgagttccattccttgtgtaaattgaagtcact 28927456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 15313 - 15277
Alignment:
Q  137 aggttctttctttagttcctgatttattgaaggttga 173  Q
    ||||||| || ||||||||||||||||||||||||||    
T  15313 aggttctctccttagttcctgatttattgaaggttga 15277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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