View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19340_low_6 (Length: 335)
Name: NF19340_low_6
Description: NF19340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19340_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 42265352 - 42265043
Alignment:
| Q |
1 |
aaaacaaattgaagaccaatgtgaaccaaagcgaaaccaccaaaaagaacataaccaaactaatccaagtgaaataggagaaacataacaaccagagacg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42265352 |
aaaacaaattgaagaccaatgtgaaccaaagcgaaaccaccaaaaagaacataaccaaactaatccaagtgaaataggagaaacataacaatcagagacg |
42265253 |
T |
|
| Q |
101 |
aacaaaattaacaagaggcacaagacactcaatcaaagcggatcaaaccatgctcttgataccatgttaaccatctacagtttcaatataataataaagg |
200 |
Q |
| |
|
||||||||||||||||| ||| ||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42265252 |
aacaaaattaacaagagacacgagacactgaatcaaagcggatcaaaccatgct--------catgttaaccatctacggtttcaatataataataaagg |
42265161 |
T |
|
| Q |
201 |
agctggctagggtttcataagaatgacaatggcattgcataatattga----atacaagcgaatatcataaccgcagtaacctattatctcaaacttccc |
296 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42265160 |
agccggctagggtttcataagaatgacaatggcattgcataatattgaatatatacaagcaaatatcataaccgcagtaacctattatct-aaacttccc |
42265062 |
T |
|
| Q |
297 |
cttaaactcatgatccaat |
315 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
42265061 |
cttaaactcatgatccaat |
42265043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 20361813 - 20361732
Alignment:
| Q |
53 |
aaccaaactaatccaagtgaaataggagaaacataacaaccagagacgaacaaaattaacaagaggcacaagacactcaatc |
134 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
20361813 |
aaccaaactaatccaacacaaatatgagaaacataacaactagagacaaacaaaattgacaagaggcacaagacactcaatc |
20361732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 171
Target Start/End: Complemental strand, 10740779 - 10740748
Alignment:
| Q |
140 |
ggatcaaaccatgctcttgataccatgttaac |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10740779 |
ggatcaaaccatgctcttgataccatgttaac |
10740748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 13166635 - 13166603
Alignment:
| Q |
138 |
gcggatcaaaccatgctcttgataccatgttaa |
170 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
13166635 |
gcggatcaaacgatgctcttgataccatgttaa |
13166603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 10414257 - 10414219
Alignment:
| Q |
133 |
tcaaagcggatcaaaccatgctcttgataccatgttaac |
171 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10414257 |
tcaaaacggatcaaaccatgctcttgataccatgttaac |
10414219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 2483701 - 2483666
Alignment:
| Q |
136 |
aagcggatcaaaccatgctcttgataccatgttaac |
171 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2483701 |
aagcggatcgaaccatgctcttgataccatgttaac |
2483666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 24135130 - 24135092
Alignment:
| Q |
133 |
tcaaagcggatcaaaccatgctcttgataccatgttaac |
171 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
24135130 |
tcaaagcggatcaaaccacgctcttgataccatcttaac |
24135092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University