View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19340_low_8 (Length: 313)

Name: NF19340_low_8
Description: NF19340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19340_low_8
NF19340_low_8
[»] chr5 (1 HSPs)
chr5 (19-313)||(11369332-11369626)


Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 11369626 - 11369332
Alignment:
Q  19 aggatccttggcagacatgcagcattatgaaaagaacgctttcgcaactgatacaaaaaacaccataatagaaaataaataagcaccggagaaaagtagc 118  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11369626 aggatccttagcagacatgcagcattatgaaaagaacgctttcgcaactgatacaaaaaacaccataatagaaaataaataagcaccggagaaaagtagc 11369527  T
Q  119 gacggacaataaatagtcaaataaaatatcgatgtaaaagaaaatcagcggtcaacttactatctccttgattgtctttttctctacaagaagataattg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11369526 gacggacaataaatagtcaaataaaatatcgatgtaaaagaaaatcagcggtcaacttactatctccttgattgtctttttctctacaagaagataattg 11369427  T
Q  219 tctcccttcttctgtgtcatgttagaacaaataacatcaatcagcttcttcaaagtttgttggggtgcatcattcttcaaatcaatgtaaacaac 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11369426 tctcccttcttctgtgtcatgttagaacaaataacatcaatcagcttcttcaaagtttgttggggtgcatcattcttcaaatcaatgtaaacaac 11369332  T

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