View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19340_low_9 (Length: 298)
Name: NF19340_low_9
Description: NF19340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19340_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 71 - 288
Target Start/End: Original strand, 42265410 - 42265634
Alignment:
| Q |
71 |
gatcaagtgctcactgtttggttgttt-------cgagtctcacaatttggctgtttggtgattcaagtgctcacaatttggtggtttgattagattgtt |
163 |
Q |
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| T |
42265410 |
gatcaagtgctcactgtttggttgtttggtgagtcgagtctcacaatttggttgtttggtgattcaagtgctcacaatttggtggtttgattagattgtt |
42265509 |
T |
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| Q |
164 |
tctcctccttttgattattctgattgaaaattggtgttcatcaaacacaccaacatttagcagatacatttctgaatcctcaaaatagttattcaagtca |
263 |
Q |
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| T |
42265510 |
tctcttctttttgattcttctgactgaaaattggtgttcatcaaacacaccaacatttggcagatacatttctgaatcctcaaaatagttattcaagtca |
42265609 |
T |
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| Q |
264 |
atattatcctgctccctttgcttct |
288 |
Q |
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|||||||||||||||| ||| |||| |
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| T |
42265610 |
atattatcctgctcccattgtttct |
42265634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 24225502 - 24225554
Alignment:
| Q |
103 |
ctcacaatttggctgtttggtgattcaagtgctcacaatttggtggtttgatt |
155 |
Q |
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| T |
24225502 |
ctcacaatttggttgtttggtgaatcgagtgcttacaatttggttgtttgatt |
24225554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 24136914 - 24136955
Alignment:
| Q |
102 |
tctcacaatttggctgtttggtgattcaagtgctcacaattt |
143 |
Q |
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| T |
24136914 |
tctcacaatttggttgtttggtgagtcgagtgctcacaattt |
24136955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 38584180 - 38584131
Alignment:
| Q |
103 |
ctcacaatttggctgtttggtgattcaagtgctcacaatttggtggtttg |
152 |
Q |
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|||||||||||| ||||||||| | |||||||||||||||||| ||||| |
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| T |
38584180 |
ctcacaatttggtagtttggtgagttaagtgctcacaatttggttgtttg |
38584131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 19825161 - 19825112
Alignment:
| Q |
103 |
ctcacaatttggctgtttggtgattcaagtgctcacaatttggtggtttg |
152 |
Q |
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|||||||||||| ||||||| || || ||||||||||||||||| ||||| |
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| T |
19825161 |
ctcacaatttggttgtttggcgagtcgagtgctcacaatttggttgtttg |
19825112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 24487128 - 24487088
Alignment:
| Q |
104 |
tcacaatttggctgtttggtgattcaagtgctcacaatttg |
144 |
Q |
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| T |
24487128 |
tcacaatttggttgtttggtgagtcaagttctcacaatttg |
24487088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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