View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19341_high_1 (Length: 558)
Name: NF19341_high_1
Description: NF19341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19341_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 29 - 538
Target Start/End: Original strand, 43223901 - 43224409
Alignment:
| Q |
29 |
caacatgagcatcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaaggttaaccnnnnnnnntcatcaa |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43223901 |
caacatgagcatcatggccacatgcatgcatctttccaggcactttactcttatgctcccactccaccaattcctaaggttaaccaaaaaaaatcatcaa |
43224000 |
T |
|
| Q |
129 |
tgaaatatagatgaaacagtatcctaatataaaatccaagataatatatggttgaaaaccaaaacactcagnnnnnnntgtagacctgcatgagaagagc |
228 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43224001 |
tgaaatatagatgaaacagtatcctaataaaaaatccaagataatatatggttgaaaaccaaaacactcagaaaaaa-tgtagacctgcatgagaagagc |
43224099 |
T |
|
| Q |
229 |
atccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatgtttatattgaacacttaat |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43224100 |
atccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtttatattgaacacctaat |
43224199 |
T |
|
| Q |
329 |
tcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttatatcaaccatccaatcaa |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43224200 |
tcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttatatcaaccatccaatcaa |
43224299 |
T |
|
| Q |
429 |
aaacttgaggttccttggctaattccaggaaattggggattgcgtttgaactggaggaagaatctgagaagattggtgtagcagataaaaaggaaatgaa |
528 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43224300 |
aaacttgaggttccttggctaattccaggaaattggggattgcgtttgaactggaggaagaatctgagaagattggtgtagcagataaaaaggaaatgaa |
43224399 |
T |
|
| Q |
529 |
catgatgatg |
538 |
Q |
| |
|
|||||||||| |
|
|
| T |
43224400 |
catgatgatg |
43224409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 212 - 538
Target Start/End: Complemental strand, 41654815 - 41654489
Alignment:
| Q |
212 |
acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatgtt |
311 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41654815 |
acctgcataagaagagcatccatttcagctctgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
41654716 |
T |
|
| Q |
312 |
tatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttat |
411 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41654715 |
tatatgtaacacccaattcatccaattttgttcttataagcttactggtctcaaattcttcataaccaagttcaggattctcatgaatcttcctccttat |
41654616 |
T |
|
| Q |
412 |
atcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattgcgtttgaactggaggaagaatctgagaagattggtgtagca |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
41654615 |
atcaaccatccaatcaaaaacttgaggttccttggctaattccaggaagttggggattgcatttgaactggtggaagagtctgagaagattggtgtagca |
41654516 |
T |
|
| Q |
512 |
gataaaaaggaaatgaacatgatgatg |
538 |
Q |
| |
|
||||||||||||||||| |||| |||| |
|
|
| T |
41654515 |
gataaaaaggaaatgaaaatgacgatg |
41654489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 212 - 456
Target Start/End: Original strand, 43213348 - 43213592
Alignment:
| Q |
212 |
acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatgtt |
311 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
43213348 |
acctgcataagaagagcatccatctcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactacaactggatgtt |
43213447 |
T |
|
| Q |
312 |
tatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttat |
411 |
Q |
| |
|
||||| | |||| ||||||||| |||| ||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43213448 |
tatatgggacacctaattcatctaattttgttcttataagcttactggtttcaaattcttcataaccaacttcaggattctcatgaatcttcctccttat |
43213547 |
T |
|
| Q |
412 |
atcaaccatccaatcaaaaacttgaggttccttggctaattccag |
456 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
43213548 |
atcaaccatccaatcaaaaacttgaggctctttggctaattccag |
43213592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 212 - 538
Target Start/End: Complemental strand, 41650275 - 41649937
Alignment:
| Q |
212 |
acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatgtt |
311 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41650275 |
acctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
41650176 |
T |
|
| Q |
312 |
tatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttat |
411 |
Q |
| |
|
||||| | |||| |||||||||||||| ||||| |||||||||||| || | |||||| | ||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
41650175 |
tatatgggacacctaattcatccaattttgttcgtataagcttactagttttaaattcttgataactcagttcaggattctcatgaatttttctccttat |
41650076 |
T |
|
| Q |
412 |
atcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattg---------cgtttgaa---ctggaggaagaatctgagaag |
499 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||| | || || || ||||||| | |||||| ||||||| |||||||||||| |
|
|
| T |
41650075 |
atcaaccatgaaatcaaaaacttgaggttccttggataaatttagaaagtttgggattgataagtggtcatttgaagtggtggaggaggaatctgagaag |
41649976 |
T |
|
| Q |
500 |
attggtgtagcagataaaaaggaaatgaacatgatgatg |
538 |
Q |
| |
|
|||||||| |||||| ||||| ||||||| ||||||||| |
|
|
| T |
41649975 |
attggtgttgcagatgaaaagaaaatgaaaatgatgatg |
41649937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 210 - 538
Target Start/End: Original strand, 43227882 - 43228225
Alignment:
| Q |
210 |
agacctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
43227882 |
agacctgcatgagaagagcatccatgtcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatg |
43227981 |
T |
|
| Q |
310 |
tttatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctcctt |
409 |
Q |
| |
|
|||||||||||||| || |||||||||| |||||||||||||||||| ||||||||||| | ||||| |||||||||||||||||||| || |||||| |
|
|
| T |
43227982 |
tttatattgaacacccaactcatccaattttgttcttataagcttactagtctcaaattcttgataactcagttcaggattctcatgaatttttctcctt |
43228081 |
T |
|
| Q |
410 |
atatcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattg---------cgtttgaactgg------aggaagaatctg |
494 |
Q |
| |
|
||| ||||||||| |||||||||| ||| || || ||||| || || || || ||||||| | |||||| ||| |||| ||||||| |
|
|
| T |
43228082 |
atagaaaccatccagtcaaaaactttaggctctttagctaaatctagaaagtttgggattgataagtggtcatttgaagtggtggaggaggaggaatctg |
43228181 |
T |
|
| Q |
495 |
agaagattggtgtagcagataaaaaggaaatgaacatgatgatg |
538 |
Q |
| |
|
||||||||| ||| |||||||||||| ||||||| ||||||||| |
|
|
| T |
43228182 |
agaagattgatgttgcagataaaaagaaaatgaaaatgatgatg |
43228225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 208 - 538
Target Start/End: Original strand, 43206370 - 43206709
Alignment:
| Q |
208 |
gtagacctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactgga |
307 |
Q |
| |
|
||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
43206370 |
gtagacctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactgga |
43206469 |
T |
|
| Q |
308 |
tgtttatattgaacacttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctcc |
407 |
Q |
| |
|
|||||||||||||||| || |||||||||| |||||||||||||||||| ||||||||||| | ||||| |||||||||||||||||||| || |||| |
|
|
| T |
43206470 |
tgtttatattgaacacccaactcatccaattttgttcttataagcttactagtctcaaattcttgataactcagttcaggattctcatgaatttttctcc |
43206569 |
T |
|
| Q |
408 |
ttatatcaaccatccaatcaaaaacttgaggttccttggctaattccaggaaattggggattg---------cgtttgaactggaggaagaatctgagaa |
498 |
Q |
| |
|
||||| ||||||||| |||||||||| ||| || || ||||| || || || || ||||||| | |||||| |||| || | |||||||| |
|
|
| T |
43206570 |
ttatagaaaccatccagtcaaaaactttaggctctttagctaaatctagaaagtttgggattgataagtggtcatttgaagtggaagagaagtctgagaa |
43206669 |
T |
|
| Q |
499 |
gattggtgtagcagataaaaaggaaatgaacatgatgatg |
538 |
Q |
| |
|
|| |||||| ||||| |||||| ||||||| ||||||||| |
|
|
| T |
43206670 |
gactggtgttgcagagaaaaagaaaatgaaaatgatgatg |
43206709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 41655075 - 41654905
Alignment:
| Q |
29 |
caacatgagcatcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaaggttaacc-nnnnnnnntcatca |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41655075 |
caacatgagcatcatggccacatgcatgcatctttccaggcactttactcttatgctcccactccaccaattcctaaggttaaccaaaaaaaattcatca |
41654976 |
T |
|
| Q |
128 |
atgaaatatagatgaaacag--tatcctaatataaaatccaagataatatatggttgaaaaccaaaacactc |
197 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| | || ||||||| ||| ||||||||||||||| |
|
|
| T |
41654975 |
atgaaatatagatgaaacagtatatcctaatataaaatatatgacaatatat-gtttaaaaccaaaacactc |
41654905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 41650712 - 41650635
Alignment:
| Q |
34 |
tgagcatcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaaggttaa |
111 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41650712 |
tgagcatcatgaccacatgcatgcatctttccaggtactttactcttatgctcccactccaccaattcctaatgttaa |
41650635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 43213037 - 43213120
Alignment:
| Q |
29 |
caacatgagcatcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaaggttaac |
112 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
43213037 |
caacatgagcatcatgaccacatccatgcatctttccaggtactttactcttatgctcccactccaccaattcctgaagttaac |
43213120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 43206102 - 43206178
Alignment:
| Q |
29 |
caacatgagcatcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaa |
105 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
43206102 |
caacatgagcatcatgaccacatgcatgcatctttccaggtactttacttttatgctcccactccaccatttcctaa |
43206178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 43227434 - 43227516
Alignment:
| Q |
29 |
caacatgagcatcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaaggttaa |
111 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||| || ||||||||||| |||| |||||||||| ||||| |
|
|
| T |
43227434 |
caacatgagcatcatgaccacatgcatgcatctttccaggtactttgcttttatgctcccattccaacaattcctaatgttaa |
43227516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 537
Target Start/End: Original strand, 43213628 - 43213685
Alignment:
| Q |
480 |
tggaggaagaatctgagaagattggtgtagcagataaaaaggaaatgaacatgatgat |
537 |
Q |
| |
|
||||||| ||||||||||| || ||||| ||| |||||||| ||||||| |||||||| |
|
|
| T |
43213628 |
tggaggaggaatctgagaaaataggtgttgcacataaaaagaaaatgaaaatgatgat |
43213685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 223 - 432
Target Start/End: Original strand, 5073627 - 5073836
Alignment:
| Q |
223 |
aagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaagcaataacacctgtcactgcaactggatgtttatattgaaca |
322 |
Q |
| |
|
|||||||||||| |||||||| | ||| |||||||||| | |||||||||||| || |||| ||||| || | ||||||||||| |||||| ||| | |
|
|
| T |
5073627 |
aagagcatccatatcagctcttaaagcaacaaaaggagacaatccagttcctatgaaaccaatgacaccagtgattgcaactggatatttatagggaata |
5073726 |
T |
|
| Q |
323 |
cttaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttatatcaaccatcc |
422 |
Q |
| |
|
|| | || |||||||||||||||||| | | ||| |||||||||||||||||||| | ||| |||||||||||||| ||||| || |||| | ||||| |
|
|
| T |
5073727 |
ctcagtttatccaattctgttcttatcaattcacttgtctcaaattcctcataacccaattctggattctcatgaattttccttctgatattgatcatcc |
5073826 |
T |
|
| Q |
423 |
aatcaaaaac |
432 |
Q |
| |
|
||||| |||| |
|
|
| T |
5073827 |
aatcataaac |
5073836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 5072729 - 5072808
Alignment:
| Q |
30 |
aacatgagcatcatggccacatgcatgcatctttccaggcacttcactcttatgctcccactccaccaattcctaaggtt |
109 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||| || | |||| | |||||||||||||||| ||||||||||| |
|
|
| T |
5072729 |
aacatgagcatcatgaccacacgcatgcatctttccaggtaccttactcctgtgctcccactccaccatttcctaaggtt |
5072808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 260
Target Start/End: Original strand, 31839458 - 31839492
Alignment:
| Q |
226 |
agcatccatgtcagctctaagagcgacaaaaggag |
260 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
31839458 |
agcatccatgtcagctctaagagcaacaaaaggag |
31839492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 26262888 - 26262851
Alignment:
| Q |
226 |
agcatccatgtcagctctaagagcgacaaaaggaggaa |
263 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
26262888 |
agcatccatgtcagctctaagagcaacaaatggaggaa |
26262851 |
T |
|
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