View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19341_high_13 (Length: 357)
Name: NF19341_high_13
Description: NF19341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19341_high_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 357
Target Start/End: Original strand, 19114181 - 19114527
Alignment:
| Q |
11 |
tagctgttgcagcaagagactctgcttcaagtttggaaatttcatcacgtaatttagcagccaaggcataatcttcattctcgatagcactctgaagatc |
110 |
Q |
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| T |
19114181 |
tagctgatgcagcaagagactctgcttcaagtttggaaatttcatcacgtaatttagcagccaaggcataatcttcattctcgatagcactctgaagatc |
19114280 |
T |
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| Q |
111 |
tgaactgcaagcgaaatgggattacttgctatcagtgctcaagctgaccaacagattatacggagtcaagacaaaaaatcggccagctagagtgagctta |
210 |
Q |
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| T |
19114281 |
tgaactgcaagcgaaatgggattacttgctatcagtgctcaagctgaccaacagattatacggagtcaagacaaaaaatcgtccagctagagtgagctta |
19114380 |
T |
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| Q |
211 |
ttttcacattgtcgttattgttaccaacccctcaaacatcagttcaactcacagctatattcacatcttgacgctctggaattcatgccaatgcataacc |
310 |
Q |
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| T |
19114381 |
ttttcacattgtcgttattgttaacaacccctcaaacatcagttcaattcacagctatattcacatctggacgctctggaattcatgccaatgcataacc |
19114480 |
T |
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| Q |
311 |
aaacacgcacacacttaatcacttagaacaagttagcctagaataaa |
357 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19114481 |
aaacatgcacacacttaatcacttagaacaagttagcttagaataaa |
19114527 |
T |
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