View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19341_high_14 (Length: 353)
Name: NF19341_high_14
Description: NF19341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19341_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 6942596 - 6942439
Alignment:
| Q |
30 |
accaaatatcatgtgttcattatttgcgtttactgtttctttaannnnnnnnnnnnngtaccagtttgctgttctaacatacttatgggtaacatgccat |
129 |
Q |
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| T |
6942596 |
accaaacatcgtgtgttcattatttgcgtttactgtttctttaattttttgatttttgaaccagtttgctgttctaacatacttatgggtaacatgccat |
6942497 |
T |
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| Q |
130 |
gttaacattggtagggaaaccaatgtaaaatgttacattcctcttaaatgtttttctt |
187 |
Q |
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| T |
6942496 |
gttaacattggtagggaaaccaatgtaaactgttacattcctcttaaatgtttttctt |
6942439 |
T |
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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 6788244 - 6788323
Alignment:
| Q |
173 |
ttaaatgtttttcttcgctctattgttctctaattatgttg----ttgtaatcatctctattcagt-ttacaaatcttgt |
247 |
Q |
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|||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||| |||||||||||| |
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| T |
6788244 |
ttaaatctttttcttcgatctattgttctctaattgtgttgtaaattgtaatcatctctatccagtaatacaaatcttgt |
6788323 |
T |
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