View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19341_high_18 (Length: 310)

Name: NF19341_high_18
Description: NF19341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19341_high_18
NF19341_high_18
[»] chr5 (11 HSPs)
chr5 (2-302)||(22750949-22751249)
chr5 (11-254)||(38144532-38144773)
chr5 (11-246)||(28370058-28370291)
chr5 (11-246)||(19512204-19512438)
chr5 (40-259)||(23528478-23528695)
chr5 (185-246)||(18407947-18408008)
chr5 (185-246)||(23111203-23111264)
chr5 (194-246)||(22438751-22438803)
chr5 (195-246)||(19236900-19236951)
chr5 (197-246)||(22461158-22461207)
chr5 (197-246)||(22467782-22467831)
[»] chr7 (24 HSPs)
chr7 (2-302)||(18873168-18873468)
chr7 (2-246)||(15167983-15168227)
chr7 (2-245)||(10895795-10896038)
chr7 (11-253)||(14422802-14423043)
chr7 (2-254)||(12709839-12710091)
chr7 (2-254)||(13122910-13123162)
chr7 (11-246)||(16009395-16009628)
chr7 (10-254)||(13743526-13743768)
chr7 (40-254)||(12590639-12590851)
chr7 (136-254)||(13007374-13007491)
chr7 (81-246)||(16677180-16677347)
chr7 (81-246)||(17651416-17651583)
chr7 (194-246)||(11382874-11382926)
chr7 (194-246)||(11389351-11389403)
chr7 (194-246)||(20311055-20311107)
chr7 (194-246)||(21230963-21231015)
chr7 (186-246)||(13679485-13679545)
chr7 (195-246)||(2971254-2971305)
chr7 (195-246)||(11311059-11311110)
chr7 (195-246)||(20906465-20906516)
chr7 (193-244)||(46625961-46626012)
chr7 (214-254)||(831629-831669)
chr7 (214-254)||(1196809-1196849)
chr7 (214-254)||(34958578-34958618)
[»] scaffold0026 (2 HSPs)
scaffold0026 (2-254)||(11846-12098)
scaffold0026 (11-246)||(111504-111737)
[»] chr3 (22 HSPs)
chr3 (2-246)||(14762761-14763005)
chr3 (2-246)||(38310803-38311047)
chr3 (17-246)||(20247792-20248021)
chr3 (11-246)||(9534146-9534379)
chr3 (10-246)||(24192771-24193008)
chr3 (11-246)||(23370509-23370743)
chr3 (14-246)||(55499105-55499337)
chr3 (136-246)||(24933832-24933941)
chr3 (168-254)||(41455093-41455178)
chr3 (110-254)||(16801463-16801606)
chr3 (188-246)||(18929239-18929297)
chr3 (185-246)||(17240516-17240577)
chr3 (195-246)||(13302244-13302295)
chr3 (195-246)||(13323791-13323842)
chr3 (195-246)||(12033448-12033499)
chr3 (195-246)||(13312900-13312951)
chr3 (195-246)||(17131732-17131783)
chr3 (195-246)||(51301589-51301640)
chr3 (136-246)||(10389447-10389557)
chr3 (136-246)||(10414536-10414646)
chr3 (136-246)||(10421206-10421316)
chr3 (193-246)||(16801027-16801080)
[»] scaffold1773 (1 HSPs)
scaffold1773 (2-254)||(987-1237)
[»] scaffold0006 (1 HSPs)
scaffold0006 (2-254)||(49988-50238)
[»] chr6 (24 HSPs)
chr6 (16-246)||(23057760-23057990)
chr6 (2-254)||(29614142-29614394)
chr6 (11-246)||(23839016-23839250)
chr6 (11-246)||(10986184-10986418)
chr6 (11-254)||(18800255-18800497)
chr6 (14-246)||(4477678-4477909)
chr6 (117-254)||(930091-930227)
chr6 (2-246)||(21565215-21565458)
chr6 (136-254)||(12168305-12168422)
chr6 (136-254)||(19287214-19287331)
chr6 (136-254)||(19785865-19785982)
chr6 (136-254)||(19878398-19878515)
chr6 (136-254)||(19884174-19884291)
chr6 (167-246)||(34639990-34640069)
chr6 (167-246)||(34646664-34646743)
chr6 (136-246)||(25469708-25469816)
chr6 (194-242)||(24512851-24512899)
chr6 (197-246)||(9187498-9187547)
chr6 (193-246)||(25348486-25348539)
chr6 (193-246)||(25598643-25598696)
chr6 (193-246)||(25397172-25397225)
chr6 (193-246)||(2286770-2286823)
chr6 (193-246)||(19471338-19471391)
chr6 (185-246)||(31252413-31252474)
[»] scaffold0029 (1 HSPs)
scaffold0029 (30-254)||(111717-111942)
[»] chr4 (12 HSPs)
chr4 (2-254)||(8045828-8046079)
chr4 (2-254)||(11847915-11848173)
chr4 (136-246)||(53483646-53483756)
chr4 (194-246)||(15408139-15408191)
chr4 (193-246)||(8834895-8834948)
chr4 (193-246)||(13888641-13888694)
chr4 (195-246)||(14486661-14486712)
chr4 (193-244)||(22724691-22724742)
chr4 (193-246)||(15245215-15245268)
chr4 (193-244)||(15308120-15308171)
chr4 (195-244)||(27906266-27906315)
chr4 (214-254)||(15747552-15747592)
[»] scaffold0924 (1 HSPs)
scaffold0924 (2-254)||(746-998)
[»] scaffold0117 (2 HSPs)
scaffold0117 (3-254)||(1893-2143)
scaffold0117 (3-254)||(8570-8820)
[»] scaffold0025 (1 HSPs)
scaffold0025 (10-246)||(14399-14635)
[»] chr8 (14 HSPs)
chr8 (11-246)||(44477441-44477674)
chr8 (11-246)||(44492599-44492832)
chr8 (2-246)||(8727736-8727980)
chr8 (2-254)||(23866422-23866674)
chr8 (11-158)||(27940946-27941091)
chr8 (136-246)||(17054533-17054642)
chr8 (193-304)||(18614271-18614382)
chr8 (185-246)||(23482056-23482117)
chr8 (193-246)||(39364919-39364972)
chr8 (195-246)||(29643389-29643440)
chr8 (194-246)||(14056567-14056619)
chr8 (194-246)||(25111976-25112028)
chr8 (195-246)||(24320674-24320725)
chr8 (193-246)||(21931696-21931749)
[»] chr2 (15 HSPs)
chr2 (11-246)||(19661457-19661690)
chr2 (11-246)||(6483536-6483769)
chr2 (11-246)||(6487003-6487236)
chr2 (81-254)||(26583715-26583886)
chr2 (2-246)||(23878817-23879059)
chr2 (2-246)||(23089058-23089301)
chr2 (2-246)||(23101466-23101709)
chr2 (136-246)||(5706027-5706137)
chr2 (185-246)||(23265133-23265194)
chr2 (185-246)||(23280201-23280262)
chr2 (188-246)||(21908353-21908411)
chr2 (193-246)||(24661576-24661629)
chr2 (195-246)||(10577-10628)
chr2 (195-246)||(25180933-25180984)
chr2 (146-246)||(26885133-26885233)
[»] chr1 (12 HSPs)
chr1 (11-246)||(20437027-20437261)
chr1 (136-254)||(41111977-41112094)
chr1 (185-304)||(32651563-32651682)
chr1 (185-246)||(18712790-18712851)
chr1 (194-246)||(19663520-19663572)
chr1 (193-246)||(10811786-10811839)
chr1 (193-246)||(20805320-20805373)
chr1 (194-246)||(11158093-11158145)
chr1 (195-246)||(20851136-20851187)
chr1 (195-246)||(20857763-20857814)
chr1 (195-246)||(21706276-21706327)
chr1 (195-246)||(21710818-21710869)
[»] scaffold0247 (1 HSPs)
scaffold0247 (2-254)||(11150-11401)
[»] scaffold0553 (1 HSPs)
scaffold0553 (11-246)||(10199-10433)
[»] scaffold0544 (1 HSPs)
scaffold0544 (11-246)||(1529-1763)
[»] scaffold0058 (1 HSPs)
scaffold0058 (10-254)||(109-350)
[»] scaffold0090 (1 HSPs)
scaffold0090 (10-254)||(17985-18229)
[»] scaffold0456 (4 HSPs)
scaffold0456 (167-302)||(904-1039)
scaffold0456 (167-302)||(8049-8184)
scaffold0456 (10-104)||(806-899)
scaffold0456 (10-104)||(7951-8044)
[»] scaffold0476 (1 HSPs)
scaffold0476 (2-246)||(3296-3540)
[»] scaffold0154 (1 HSPs)
scaffold0154 (110-254)||(30772-30917)
[»] scaffold0077 (1 HSPs)
scaffold0077 (2-246)||(3625-3868)
[»] scaffold0634 (1 HSPs)
scaffold0634 (2-90)||(3470-3558)
[»] scaffold0796 (2 HSPs)
scaffold0796 (136-254)||(1728-1845)
scaffold0796 (136-254)||(5751-5868)
[»] scaffold0004 (1 HSPs)
scaffold0004 (185-296)||(116887-116998)
[»] scaffold0129 (1 HSPs)
scaffold0129 (138-246)||(45278-45386)
[»] scaffold0222 (1 HSPs)
scaffold0222 (185-246)||(16811-16872)
[»] scaffold0461 (1 HSPs)
scaffold0461 (185-246)||(11-72)
[»] scaffold0146 (1 HSPs)
scaffold0146 (185-246)||(13623-13684)
[»] scaffold0020 (1 HSPs)
scaffold0020 (185-246)||(101931-101992)
[»] scaffold0310 (1 HSPs)
scaffold0310 (194-246)||(17643-17695)
[»] scaffold0107 (1 HSPs)
scaffold0107 (194-246)||(40535-40587)
[»] scaffold0019 (1 HSPs)
scaffold0019 (194-246)||(135473-135525)
[»] scaffold0235 (1 HSPs)
scaffold0235 (196-246)||(22596-22646)
[»] scaffold0124 (1 HSPs)
scaffold0124 (194-246)||(34279-34331)
[»] scaffold0138 (1 HSPs)
scaffold0138 (193-246)||(12296-12349)
[»] scaffold0317 (1 HSPs)
scaffold0317 (186-246)||(1378-1438)
[»] scaffold0139 (1 HSPs)
scaffold0139 (194-246)||(15000-15052)
[»] scaffold0096 (1 HSPs)
scaffold0096 (193-246)||(39510-39563)
[»] scaffold0815 (1 HSPs)
scaffold0815 (198-246)||(1453-1501)
[»] scaffold1318 (1 HSPs)
scaffold1318 (195-246)||(1916-1967)
[»] scaffold0348 (1 HSPs)
scaffold0348 (195-246)||(9336-9387)
[»] scaffold0127 (1 HSPs)
scaffold0127 (195-246)||(10239-10290)
[»] scaffold0023 (1 HSPs)
scaffold0023 (195-246)||(135438-135489)
[»] scaffold0001 (1 HSPs)
scaffold0001 (195-246)||(493032-493082)
[»] scaffold2054 (1 HSPs)
scaffold2054 (161-254)||(680-774)
[»] scaffold0609 (1 HSPs)
scaffold0609 (185-246)||(5861-5922)
[»] scaffold0335 (1 HSPs)
scaffold0335 (193-246)||(2631-2684)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 2 - 302
Target Start/End: Original strand, 22750949 - 22751249
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22750949 atacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 22751048  T
Q  102 caagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttc 201  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  22751049 caagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttc 22751148  T
Q  202 agaaattatagattatgattattgagagatagtctcacccttaccatagttttagaagaaacgcacaacgaccagattctctgactatacttgttcatct 301  Q
    |||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  22751149 agaaattatagattatgattatcgagagaaagtctcacccttaccttagttttagaagaaacgcacaacgaccggattctctgactatacttgttcttct 22751248  T
Q  302 c 302  Q
    |    
T  22751249 c 22751249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 38144773 - 38144532
Alignment:
Q  11 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 110  Q
    |||||||||||||||||||| || ||| |||||||||||||||||||||| || ||  | |||||||||||||||||| ||||||| |||||||  ||||    
T  38144773 ttcatcaattcatccaatcaatcgtaa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacattacaatagaat 38144675  T
Q  111 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 210  Q
    ||||| ||||| |||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  38144674 taacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattat 38144576  T
Q  211 agattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  38144575 agattatgattattgagagatagtctcacccttaccttagtttt 38144532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 28370291 - 28370058
Alignment:
Q  11 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 110  Q
    ||||||||||||||| |||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||| |||||||  ||||||  ||||    
T  28370291 ttcatcaattcatcccatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacgttacaacagaat 28370193  T
Q  111 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 210  Q
    ||||| ||||| |||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28370192 taacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattat 28370094  T
Q  211 agattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||||||||||||||||||||||    
T  28370093 agattatgattattgagagatagtctcacccttacc 28370058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 19512204 - 19512438
Alignment:
Q  11 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 110  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||| |||||||  ||||||  ||||    
T  19512204 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacgttacaatagaat 19512302  T
Q  111 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaatta 209  Q
    ||||| ||||| |||||| ||||| ||| ||||||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  19512303 taacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaatta 19512401  T
Q  210 tagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||||||||||||||||||||||    
T  19512402 tagattatgattattgagagatagtctcacccttacc 19512438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 40 - 259
Target Start/End: Original strand, 23528478 - 23528695
Alignment:
Q  40 ttcaatcaatttatg-atcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttca 138  Q
    ||||||||||| ||| || |||||| |||||  ||||||| |||| |||| ||||||| ||| ||||  || |||||  ||| |||| || |  || |||    
T  23528478 ttcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaaaactaacatcatccttactcatt--ccatca 23528575  T
Q  139 gaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctca 238  Q
    |||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23528576 gaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctca 23528674  T
Q  239 cccttaccatagttttagaag 259  Q
    |||||||| ||||||||||||    
T  23528675 cccttaccttagttttagaag 23528695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 18408008 - 18407947
Alignment:
Q  185 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18408008 caattagatcaattttcagaaattatatattatgattattgagagatagtctcacccttacc 18407947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 23111264 - 23111203
Alignment:
Q  185 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  23111264 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacc 23111203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 22438803 - 22438751
Alignment:
Q  194 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22438803 caattttcagaaattatacattatgattattgagagatagtctcacccttacc 22438751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 19236900 - 19236951
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  19236900 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 19236951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 22461158 - 22461207
Alignment:
Q  197 ttttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  22461158 ttttcagaaattatatattatgactattgaaagataatcccacccttacc 22461207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 22467782 - 22467831
Alignment:
Q  197 ttttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  22467782 ttttcagaaattatatattatgactattgaaagataatcccacccttacc 22467831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 2 - 302
Target Start/End: Original strand, 18873168 - 18873468
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18873168 atacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 18873267  T
Q  102 caagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttc 201  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  18873268 caagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttc 18873367  T
Q  202 agaaattatagattatgattattgagagatagtctcacccttaccatagttttagaagaaacgcacaacgaccagattctctgactatacttgttcatct 301  Q
    |||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||| |||    
T  18873368 agaaattatagattatgattatcgagagaaagtctcacccttaccttagttttagaagaaacgcacaacggccggattctctgactatacttgttcttct 18873467  T
Q  302 c 302  Q
    |    
T  18873468 c 18873468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 2 - 246
Target Start/End: Original strand, 15167983 - 15168227
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15167983 atacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 15168082  T
Q  102 caagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttc 201  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  15168083 caagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttc 15168182  T
Q  202 agaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  15168183 agaaattatagattatgattatcgagagatagtctcacccttacc 15168227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 245
Target Start/End: Complemental strand, 10896038 - 10895795
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10896038 atacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 10895939  T
Q  102 caagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttcc-aaaactaagcaattaggtcaatttt 200  Q
    |||| ||||||||| ||||| ||||| |||||| ||||||||||||| |||||||||||| |||||||| |||| ||||||| |||||||||||||||||    
T  10895938 caagagaattaacatgatcaataccc-attcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaatttt 10895840  T
Q  201 cagaaattatagattatgattattgagagatagtctcacccttac 245  Q
    || ||||||||||||||||||||||||||||||||||||||||||    
T  10895839 caaaaattatagattatgattattgagagatagtctcacccttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 14422802 - 14423043
Alignment:
Q  11 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 110  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||| | |||||||||||||||||| ||||||| |||||||  ||||    
T  14422802 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattacattacaacagaat 14422900  T
Q  111 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaatta 209  Q
    ||||| ||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  14422901 taacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaatta 14422999  T
Q  210 tagattatgattattgagagatagtctcacccttaccatagttt 253  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  14423000 tagattatgattattgagagatagtctcacccttaccttagttt 14423043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 12710091 - 12709839
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaa-tcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatt 100  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| ||| |||| |||||||||| |||||| ||||||||||  |||||||||||||||||    
T  12710091 atacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcacagcaacaacaa-gattaagtttatattctgaacattatatt 12709993  T
Q  101 acaagg-gaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattt 199  Q
    ||||   ||||||||| |||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  12709992 acaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tt 12709894  T
Q  200 tcagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  12709893 tcaggaattataaattatgattattgagagatagtctcacccttaccttagtttt 12709839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 13123162 - 13122910
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaa-tcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatt 100  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| ||| |||| |||||||||| |||||| ||||||||||  |||||||||||||||||    
T  13123162 atacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcacagcaacaacaa-gattaagtttatattctgaacattatatt 13123064  T
Q  101 acaagg-gaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattt 199  Q
    ||||   ||||||||| |||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  13123063 acaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tt 13122965  T
Q  200 tcagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  13122964 tcaggaattataaattatgattattgagagatagtctcacccttaccttagtttt 13122910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 16009395 - 16009628
Alignment:
Q  11 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 110  Q
    |||||||||||||||||||| |||||| ||||||||| |||||||||||| || ||  | |||||||||||||||||| ||||||| |||||||  ||||    
T  16009395 ttcatcaattcatccaatcaatcataa-tttcaatcagtttatgatcacaacaacagtatagattaagttttcattctaaacattacattacaacagaat 16009493  T
Q  111 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 210  Q
    ||||| ||||| |||||| ||||| ||||||||||||| ||||| |||||| |||||||| ||||||||| | |||||||||||||||||||||||||||    
T  16009494 taacatgatcaataccca-ttcccctcagaatcatcatcaaaccttaacccacaatttatcttccaaaaccatgcaattaggtcaattttcagaaattat 16009592  T
Q  211 agattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||||||||||||||||||||||    
T  16009593 agattatgattattgagagatagtctcacccttacc 16009628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 13743526 - 13743768
Alignment:
Q  10 attcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaa 109  Q
    ||||||||||| |||||| ||  ||||| |||||| ||||||||||||||||||  |||| ||||||||| |||| ||||||||  ||| ||||||  ||    
T  13743526 attcatcaatttatccaaccaagcataa-tttcaaccaatttatgatcacagcaataacatagattaagtcttcaatctgaacagcataatacaagaaaa 13743624  T
Q  110 ttaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaatta 209  Q
    |||||| |||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||    
T  13743625 ttaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaatta 13743723  T
Q  210 tagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    || |||||||||||||||||||||||||||||||||| |||||||    
T  13743724 taaattatgattattgagagatagtctcacccttaccttagtttt 13743768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 40 - 254
Target Start/End: Complemental strand, 12590851 - 12590639
Alignment:
Q  40 ttcaatcaatttatg-atcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttca 138  Q
    ||||||||||| ||| || |||||| |||||  ||||||| ||||||||| ||||||| ||| ||||  || |||||  ||| |||| || |  || |||    
T  12590851 ttcaatcaattaatggattacagcaacaacatggattaagctttcattcttaacattaaattccaagaaaactaacatcatctttactcatt--ccatca 12590754  T
Q  139 gaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctca 238  Q
    |||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12590753 gaatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctca 12590655  T
Q  239 cccttaccatagtttt 254  Q
    |||||||| |||||||    
T  12590654 cccttaccttagtttt 12590639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 13007374 - 13007491
Alignment:
Q  136 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 235  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13007374 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 13007472  T
Q  236 tcacccttaccatagtttt 254  Q
    ||||||||||| |||||||    
T  13007473 tcacccttaccttagtttt 13007491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 81 - 246
Target Start/End: Original strand, 16677180 - 16677347
Alignment:
Q  81 ttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt-attttccaaaa 179  Q
    |||||||||||||| |  ||||||   | |||||| ||||||||| | || | | ||| ||||||||| ||||||||||||| ||||| || ||||||||    
T  16677180 ttcattctgaacatcactttacaacatatttaacatgatcattacaccatcctcctcaaaatcatcatcaaaccctaacccttaattttatcttccaaaa 16677279  T
Q  180 -ctaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
     ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16677280 actatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttacc 16677347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 81 - 246
Target Start/End: Original strand, 17651416 - 17651583
Alignment:
Q  81 ttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt-attttccaaaa 179  Q
    |||||||||||||| |  ||||||   | |||||| ||||||||| | || | | ||| ||||||||| ||||||||||||| ||||| || ||||||||    
T  17651416 ttcattctgaacatcactttacaacatatttaacatgatcattacaccatcctcctcaaaatcatcatcaaaccctaacccttaattttatcttccaaaa 17651515  T
Q  180 -ctaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
     ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17651516 actatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttacc 17651583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 11382926 - 11382874
Alignment:
Q  194 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11382926 caattttcagaaattatatattatgattattgagagatagtctcacccttacc 11382874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 11389403 - 11389351
Alignment:
Q  194 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11389403 caattttcagaaattatatattatgattattgagagatagtctcacccttacc 11389351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 20311107 - 20311055
Alignment:
Q  194 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  20311107 caattttcagaaattatacgttatgattattgagagatagtctcacccttacc 20311055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 21231015 - 21230963
Alignment:
Q  194 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  21231015 caattttcagaaattatatactatgattattgagagatagtctcacccttacc 21230963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 13679485 - 13679545
Alignment:
Q  186 aattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||| |||||||||| |||||||| || ||||| ||||| |||||||||||||||||||    
T  13679485 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacc 13679545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 2971254 - 2971305
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  2971254 aattttcagaaattataaattatgactattgaaagataatcccacccttacc 2971305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 11311059 - 11311110
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||| ||||||| || | ||| ||||||||||||||||||||||||||||    
T  11311059 aatttttagaaattctacactattattattgagagatagtctcacccttacc 11311110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 20906516 - 20906465
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  20906516 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 20906465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 46625961 - 46626012
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcaccctta 244  Q
    ||||||||| ||||||||| ||||| || |||||||| ||||||||||||||    
T  46625961 tcaattttccgaaattatatattataatcattgagagttagtctcaccctta 46626012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 831669 - 831629
Alignment:
Q  214 ttatgattattgagagatagtctcacccttaccatagtttt 254  Q
    |||| ||||||||||| |||||||||||||||| |||||||    
T  831669 ttataattattgagagttagtctcacccttaccttagtttt 831629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 1196849 - 1196809
Alignment:
Q  214 ttatgattattgagagatagtctcacccttaccatagtttt 254  Q
    |||| ||||||||||| |||||||||||||||| |||||||    
T  1196849 ttataattattgagagttagtctcacccttaccttagtttt 1196809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 34958578 - 34958618
Alignment:
Q  214 ttatgattattgagagatagtctcacccttaccatagtttt 254  Q
    |||| ||||||||||| |||||||||||||||| |||||||    
T  34958578 ttataattattgagagttagtctcacccttaccttagtttt 34958618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 12098 - 11846
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  12098 atacacaaattcatcaattcatccaatcactcataaatttcaatcaacttatgatcacagcaacaacaaagattaagttttcattctgaagattatatta 11999  T
Q  102 caagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttc 201  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  11998 caagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaactctcaatttattttccaaaactatgcaattaggtcaattttc 11899  T
Q  202 agaaattatagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11898 agaaattatagattatgattattgagagatagtctcacccttaccttagtttt 11846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 111504 - 111737
Alignment:
Q  11 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 110  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||| ||||||| |||||||  ||||    
T  111504 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacattacaacagaat 111602  T
Q  111 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 210  Q
    ||||| ||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  111603 taacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattat 111701  T
Q  211 agattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||||||||||||||||||||||    
T  111702 agattatgattattgagagatagtctcacccttacc 111737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 14763005 - 14762761
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14763005 atacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 14762906  T
Q  102 caagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttc 201  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  14762905 caagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttc 14762806  T
Q  202 agaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  14762805 agaaattatagattatgattatcgagagatagtctcacccttacc 14762761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 38311047 - 38310803
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38311047 atacacaaattcatccattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 38310948  T
Q  102 caagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttc 201  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| |||    
T  38310947 caagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatattc 38310848  T
Q  202 agaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  38310847 agaaattatagattatgattatcgagagatagtctcacccttacc 38310803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 20248021 - 20247792
Alignment:
Q  17 aattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacac 116  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||     
T  20248021 aattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagaaaattaacat 20247922  T
Q  117 gatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagatta 216  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  20247921 gatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagatta 20247822  T
Q  217 tgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||||||||||||||||    
T  20247821 tgattattgagagatagtctcacccttacc 20247792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 9534146 - 9534379
Alignment:
Q  11 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 110  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||  || ||  | |||||||||||||||||| ||||||| |||||||  ||||    
T  9534146 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacgacaacagtatagattaagttttcattctaaacattacattacaacagaat 9534244  T
Q  111 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 210  Q
    ||||| ||||| |||||| ||||  ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9534245 taacatgatcaataccca-ttccactcagaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattat 9534343  T
Q  211 agattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||||||||||||||||||||||    
T  9534344 agattatgattattgagagatagtctcacccttacc 9534379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 24192771 - 24193008
Alignment:
Q  10 attcatcaattcatccaatcattcataaatttcaatcaatttatgat-cacagcagcaacaaagattaagttttcattctgaacattatattacaaggga 108  Q
    ||||||||||| ||||||||| |||||  ||||||||| |||||||| ||||||| || || |||||||||||||||||||||||| | |||||||  ||    
T  24192771 attcatcaatttatccaatcaatcatat-tttcaatcagtttatgattcacagcaacagcatagattaagttttcattctgaacatcacattacaacaga 24192869  T
Q  109 attaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttcc-aaaactaagcaattaggtcaattttcagaaat 207  Q
    ||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||    
T  24192870 attaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaat 24192969  T
Q  208 tatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24192970 tatagattatgattattgagagatagtctcacccttacc 24193008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 23370743 - 23370509
Alignment:
Q  11 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 110  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||| ||||||| |||||||  ||||    
T  23370743 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacattacaacagaat 23370645  T
Q  111 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaatta 209  Q
    ||||| ||||| |||||| ||||| ||||||||||||| |||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  23370644 taacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaatta 23370546  T
Q  210 tagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||||||||||| ||||||||||    
T  23370545 tagattatgattattgagagatagtcccacccttacc 23370509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 55499337 - 55499105
Alignment:
Q  14 atcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaa 113  Q
    ||||||||||||||||| | |||  ||||||||||||||||||||||||| |   | |||||||| |||||||| |||||| | |||||||   ||||||    
T  55499337 atcaattcatccaatcaattatat-tttcaatcaatttatgatcacagcaactgtatagattaagatttcattccgaacatcacattacaacataattaa 55499239  T
Q  114 cacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaatttt-cagaaattatag 212  Q
    || |||||||||||| ||||| ||||||||||||| |||||||||||||||||||  |   |||   |||||| ||||||||||||| | ||||||| |     
T  55499238 catgatcattaccca-ttcccctcagaatcatcatcaaaccctaaccctcaattttatcctcaaggttaagcagttaggtcaattttcccgaaattacat 55499140  T
Q  213 attat-gattattgagagatagtctcacccttacc 246  Q
    |||||  |||| |||||||||||||||||||||||    
T  55499139 attatctattaatgagagatagtctcacccttacc 55499105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 136 - 246
Target Start/End: Complemental strand, 24933941 - 24933832
Alignment:
Q  136 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 235  Q
    ||||||||||||| |||||||||   |||  ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24933941 tcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 24933843  T
Q  236 tcacccttacc 246  Q
    |||||||||||    
T  24933842 tcacccttacc 24933832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 41455178 - 41455093
Alignment:
Q  168 tattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    |||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41455178 tattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 41455093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 110 - 254
Target Start/End: Complemental strand, 16801606 - 16801463
Alignment:
Q  110 ttaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt-attttccaaaactaagcaattaggtcaattttcagaaatt 208  Q
    |||||| ||||||||| | |||| | ||| ||||||||| || |||||||| ||||||| || ||| ||| ||||||||| |||||||||||||||||||    
T  16801606 ttaacatgatcattacaccattctcctcaaaatcatcatcaa-ccctaaccttcaattttatcttcaaaagctaagcaatcaggtcaattttcagaaatt 16801508  T
Q  209 atagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    ||| || ||||||||||||||||||||||||||||||| |||||||    
T  16801507 atatat-atgattattgagagatagtctcacccttaccttagtttt 16801463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 18929239 - 18929297
Alignment:
Q  188 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  18929239 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacc 18929297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 17240577 - 17240516
Alignment:
Q  185 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||||||||    
T  17240577 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacc 17240516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 13302295 - 13302244
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||| | |||||||||||||| ||||| |||||||||||||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttacc 13302244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 13323842 - 13323791
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||| | |||||||||||||| ||||| |||||||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttacc 13323791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 12033499 - 12033448
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  12033499 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 12033448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 13312951 - 13312900
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||| |||||| | |||||||||||||| ||||| |||||||||||||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttacc 13312900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 17131732 - 17131783
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  17131732 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 17131783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 51301589 - 51301640
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||| | |||||||||||||  ||||| |||||||||||||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttacc 51301640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 246
Target Start/End: Complemental strand, 10389557 - 10389447
Alignment:
Q  136 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 235  Q
    ||||||||||||| |||||||||   |||  ||||| |  |||||||  ||||||| | | ||||||||||||||| ||||| || ||||| ||||| ||    
T  10389557 tcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatc 10389458  T
Q  236 tcacccttacc 246  Q
     ||||||||||    
T  10389457 ccacccttacc 10389447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 246
Target Start/End: Complemental strand, 10414646 - 10414536
Alignment:
Q  136 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 235  Q
    ||||||||||||| |||||||||   |||  ||||| |  |||||||  ||||||| | | ||||||||||||||| ||||| || ||||| ||||| ||    
T  10414646 tcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatc 10414547  T
Q  236 tcacccttacc 246  Q
     ||||||||||    
T  10414546 ccacccttacc 10414536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 246
Target Start/End: Complemental strand, 10421316 - 10421206
Alignment:
Q  136 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 235  Q
    ||||||||||||| |||||||||   |||  ||||| |  |||||||  ||||||| | | ||||||||||||||| ||||| || ||||| ||||| ||    
T  10421316 tcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatc 10421217  T
Q  236 tcacccttacc 246  Q
     ||||||||||    
T  10421216 ccacccttacc 10421206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 16801027 - 16801080
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||| ||||| ||||  || |||||||| ||||||||||||||||    
T  16801027 tcaattttcagaagttatatattacaatcattgagagttagtctcacccttacc 16801080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 987 - 1237
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  987 atacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaacaa-gattaagttttcattctgaacattatatta 1085  T
Q  102 caagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttc 201  Q
    |||| ||||||||| |||||||||||| ||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  1086 caagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttc 1184  T
Q  202 agaaattatagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    || |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1185 aggaattatagattatgattattgagagatagtctcacccttaccttagtttt 1237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 49988 - 50238
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  49988 atacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaacaa-gattaagttttcattctgaacattatatta 50086  T
Q  102 caagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttc 201  Q
    |||| ||||||||| |||||||||||| ||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  50087 caagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttc 50185  T
Q  202 agaaattatagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    || |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  50186 aggaattatagattatgattattgagagatagtctcacccttaccttagtttt 50238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 23057760 - 23057990
Alignment:
Q  16 caattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaaca 115  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23057760 caattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaaca 23057859  T
Q  116 cgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagatt 215  Q
     |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||    
T  23057860 tgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcaggaattatagatt 23057959  T
Q  216 atgattattgagagatagtctcacccttacc 246  Q
    |||||||| ||||||||||||||||||||||    
T  23057960 atgattatcgagagatagtctcacccttacc 23057990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 29614394 - 29614142
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||  | ||    
T  29614394 atacacaaattcatcaattcatccaatcattcataaatttcaatcaagttatgatcacagcaacaacaaagattaagttttcattctaaacatt-caata 29614296  T
Q  102 caagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattta-ttttccaaaactaagcaattaggtcaatttt 200  Q
    |||| ||||||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |||||||||| || |||| ||||||||||||    
T  29614295 caagagaattaacatgatcattacccatttcccttcataatcatcatcaaaccctaaccctcaatttatttttccaaaattatgcaactaggtcaatttt 29614196  T
Q  201 cagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29614195 cagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 29614142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 23839016 - 23839250
Alignment:
Q  11 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 110  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||||||||||| |||||||  ||||    
T  23839016 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattacattacaacagaat 23839114  T
Q  111 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaa-actaagcaattaggtcaattttcagaaatta 209  Q
    ||||| ||||| |||||| | ||||| ||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||    
T  23839115 taacatgatcaatacccattcccctt-agaatcatcatcaaaccctaaccctcaatttatcttccaaacactatgcaattaggtcaattttcagaaatta 23839213  T
Q  210 tagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||||||||||||||||||||||    
T  23839214 tagattatgattattgagagatagtctcacccttacc 23839250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 10986418 - 10986184
Alignment:
Q  11 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 110  Q
    |||||||||||||||||||| || ||| |||||||||||||||||||||| || ||  | |||||||||||||||||||||||||| |||||||  ||||    
T  10986418 ttcatcaattcatccaatcaatcgtaa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattacattacaacagaat 10986320  T
Q  111 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaatta 209  Q
    ||||| ||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||||| ||||||||    
T  10986319 taacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaatttttagaaatta 10986221  T
Q  210 tagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||| |||||||||||||||||||    
T  10986220 tagattatgattattgaaagatagtctcacccttacc 10986184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 18800255 - 18800497
Alignment:
Q  11 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 110  Q
    |||||||||||||||||||| | |||  ||||||||||||| |||||||| || ||| | |||||||| ||||||| ||||||| | |||||||  ||||    
T  18800255 ttcatcaattcatccaatcaattatat-tttcaatcaatttgtgatcacaacaacaatatagattaagatttcattttgaacatcacattacaacagaat 18800353  T
Q  111 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatt-tattttccaaaactaagcaattaggtcaattttcagaaatta 209  Q
    ||||| ||||||||| || |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18800354 taacatgatcattactca-ttccctccagaatcatcatcaaaccctaaccctcaattctattttccaaaactaagcaattaggtcaattttcagaaatta 18800452  T
Q  210 tagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    ||||||||||||||||||||||||||||||||||||  |||||||    
T  18800453 tagattatgattattgagagatagtctcacccttacattagtttt 18800497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 4477678 - 4477909
Alignment:
Q  14 atcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaa 113  Q
    ||||| ||||||||||| |||||| |||||||||||||||||||||| || ||| | |||||||||||||||||| ||||||| |||||||  ||||||     
T  4477678 atcaaatcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattacattacaacagaattag 4477776  T
Q  114 cacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaattatag 212  Q
    || ||||| |||||| ||||| ||||||||||||| |||||||||||| |||||||| |||||||| ||| |||||||||||||||||||||||||||||    
T  4477777 catgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatag 4477875  T
Q  213 attatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||||||||||||||||||||    
T  4477876 attatgattattgagagatagtctcacccttacc 4477909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 930227 - 930091
Alignment:
Q  117 gatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagatta 216  Q
    |||||||||||| |||||||||||| |||||| |||||||||||||||||||||||| ||||||||  |||||||||||||||||||||| |||||||||    
T  930227 gatcattaccca-ttcccttcagaaacatcatcaaaccctaaccctcaatttatttttcaaaactatacaattaggtcaattttcagaaactatagatta 930129  T
Q  217 tgattattgagagatagtctcacccttaccatagtttt 254  Q
    |||||||||||||||||||||||||||||| |||||||    
T  930128 tgattattgagagatagtctcacccttaccttagtttt 930091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 21565458 - 21565215
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||| || |||||||||||||||||||| | |||  ||||||||||||||||||||||||| ||  | |||||||| |||||||| |||| | | ||||    
T  21565458 atacagaacttcatcaattcatccaatcaattatat-tttcaatcaatttatgatcacagcaacagtatagattaagatttcattccgaacgtcacatta 21565360  T
Q  102 caagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttc 201  Q
    |||   |||||||| ||||||||||| |||||| | ||||||||||| |||||||||||||||||||  |   |||   |||||||||||||||||||||    
T  21565359 caacataattaacatgatcattaccc-attccccttagaatcatcatcaaaccctaaccctcaattttatcctcaaggttaagcaattaggtcaattttc 21565261  T
Q  202 agaaattatagattat-gattattgagagatagtctcacccttacc 246  Q
     ||||||| | |||||  |||| |||||||||||||||||||||||    
T  21565260 cgaaattaaatattatctattaatgagagatagtctcacccttacc 21565215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 12168305 - 12168422
Alignment:
Q  136 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 235  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12168305 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 12168403  T
Q  236 tcacccttaccatagtttt 254  Q
    ||||||||||| |||||||    
T  12168404 tcacccttaccttagtttt 12168422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 19287214 - 19287331
Alignment:
Q  136 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 235  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19287214 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 19287312  T
Q  236 tcacccttaccatagtttt 254  Q
    ||||||||||| |||||||    
T  19287313 tcacccttaccttagtttt 19287331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 136 - 254
Target Start/End: Complemental strand, 19785982 - 19785865
Alignment:
Q  136 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 235  Q
    ||||||||||||| ||||||||||  ||| |||||||||||||||||  ||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  19785982 tcagaatcatcatcaaaccctaactttcattttattttccaaaactattcaactaggtcaattt-cagaaattatagattatgattattgagagatagtc 19785884  T
Q  236 tcacccttaccatagtttt 254  Q
    ||||||||||| |||||||    
T  19785883 tcacccttaccttagtttt 19785865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 19878398 - 19878515
Alignment:
Q  136 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 235  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19878398 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 19878496  T
Q  236 tcacccttaccatagtttt 254  Q
    ||||||||||| |||||||    
T  19878497 tcacccttaccttagtttt 19878515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 19884174 - 19884291
Alignment:
Q  136 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 235  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19884174 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 19884272  T
Q  236 tcacccttaccatagtttt 254  Q
    ||||||| ||| |||||||    
T  19884273 tcaccctaaccttagtttt 19884291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 34640069 - 34639990
Alignment:
Q  167 ttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34640069 ttattttccaaaactattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttacc 34639990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 34646743 - 34646664
Alignment:
Q  167 ttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34646743 ttattttccaaaattattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttacc 34646664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 246
Target Start/End: Complemental strand, 25469816 - 25469708
Alignment:
Q  136 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 235  Q
    ||||||| ||||| |||||||||   |||  |||||||||||||| |  ||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  25469816 tcagaattatcatcaaaccctaattttcatattattttccaaaaccattcaattaggtcaattt-cagaa-ttatagattatgattattgagagatagtc 25469719  T
Q  236 tcacccttacc 246  Q
    |||||||||||    
T  25469718 tcacccttacc 25469708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 24512899 - 24512851
Alignment:
Q  194 caattttcagaaattatagattatgattattgagagatagtctcaccct 242  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||    
T  24512899 caattttcagaaattatatactatgattattgagagatagtctcaccct 24512851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 9187498 - 9187547
Alignment:
Q  197 ttttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||  |||| |||||||||||||||||||||||||||||    
T  9187498 ttttcagaaattatgtattaagattattgagagatagtctcacccttacc 9187547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 25348486 - 25348539
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||| || | ||| ||||||||||||||||||||||||||||    
T  25348486 tcaattttcagaaattctatactattattattgagagatagtctcacccttacc 25348539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 25598643 - 25598696
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||| |||| |||||||| |||||||| ||||||||||||||||    
T  25598643 tcaattttcagaaaatatatattatgatcattgagagttagtctcacccttacc 25598696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 25397172 - 25397225
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||||| |||||||| || ||||| ||| ||||||||||||    
T  25397172 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacc 25397225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 2286823 - 2286770
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||| ||||| ||||  || |||||||| ||||||||||||||||    
T  2286823 tcaattttcagaagttatatattacaatcattgagagttagtctcacccttacc 2286770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 19471391 - 19471338
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||| ||||||||||| |||||||| || ||||| ||| ||||||||||||    
T  19471391 tcaatttccagaaattatatattatgatcatcgagaggtagcctcacccttacc 19471338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 31252413 - 31252474
Alignment:
Q  185 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||| | ||||||||||||||||| ||||| || ||| | ||||| |||||||||||||    
T  31252413 caattagattaattttcagaaattatatattataatcattaaaagataatctcacccttacc 31252474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 30 - 254
Target Start/End: Original strand, 111717 - 111942
Alignment:
Q  30 attcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaa 129  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||     
T  111717 attcatcaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccat 111816  T
Q  130 ttcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaa-ttttcagaaattatagattatgattattgaga 228  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  111817 ttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatttttcagaaattatagattatgattattgaga 111916  T
Q  229 gatagtctcacccttaccatagtttt 254  Q
    |||||||||||||||||| |||||||    
T  111917 gatagtctcacccttaccttagtttt 111942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 8046079 - 8045828
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  8046079 atacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaacaaggattaagttttcattctgaacattatatta 8045980  T
Q  102 caagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttc 201  Q
    |||| |||||||||  ||| ||||||| |||||||||||||  || | ||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  8045979 caagagaattaacattatctttacccatttcccttcagaattctcgtcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttc 8045881  T
Q  202 agaaattatagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  8045880 agaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 8045828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 11847915 - 11848173
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11847915 atacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattatatta 11848014  T
Q  102 caagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaa------tttattttccaaaactaagcaattaggtca 195  Q
     ||  | ||||||| |||||||||||| | | |||||||||| |||| ||||||||||||||||      || ||||| |||||||| || | |||||||    
T  11848015 taaaaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaattgattttaatttttcaaaactatgccactaggtca 11848114  T
Q  196 attttcagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11848115 attttcaggaattatagattatgattattgagagatagtctcacccttaccttagtttt 11848173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 246
Target Start/End: Original strand, 53483646 - 53483756
Alignment:
Q  136 tcagaatcatcattaaaccctaaccctca-atttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagt 234  Q
    ||||||||||||| |||||||||   ||| |||  ||||| |||||||  |||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  53483646 tcagaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattattgagagatagt 53483744  T
Q  235 ctcacccttacc 246  Q
    ||||||||||||    
T  53483745 ctcacccttacc 53483756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 15408139 - 15408191
Alignment:
Q  194 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  15408139 caattttcagaaattatatactatgattattgagagatagtctcacccttacc 15408191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 8834895 - 8834948
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||    
T  8834895 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacc 8834948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 13888641 - 13888694
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||    
T  13888641 tcaattttcagaaattatacattatgatcattgagagttagcctcacccttacc 13888694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 14486661 - 14486712
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||| |||||||| |||||  ||||||||||||||||||    
T  14486661 aattttcagaaattatatattatgatcattgaaggatagtctcacccttacc 14486712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 22724742 - 22724691
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcaccctta 244  Q
    |||||||||||||||| || | ||| ||||||||||||||||||||||||||    
T  22724742 tcaattttcagaaattctatactattattattgagagatagtctcaccctta 22724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 15245215 - 15245268
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||||| |||| ||| |||||||| ||| ||||||||||||    
T  15245215 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttacc 15245268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 15308120 - 15308171
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcaccctta 244  Q
    ||||||||||||||||||| |||| ||| |||||||| ||| ||||||||||    
T  15308120 tcaattttcagaaattatatattacgatcattgagagttagcctcaccctta 15308171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 27906266 - 27906315
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcaccctta 244  Q
    ||||||||||||||||| |||||||| ||||| ||||| || ||||||||    
T  27906266 aattttcagaaattatacattatgatcattgaaagataatcccaccctta 27906315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 15747592 - 15747552
Alignment:
Q  214 ttatgattattgagagatagtctcacccttaccatagtttt 254  Q
    |||| ||||||||||| |||||||||||||||| |||||||    
T  15747592 ttataattattgagagttagtctcacccttaccttagtttt 15747552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 998 - 746
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| || |||||| ||||||||||| || |||||||||||||||    
T  998 atacacaaattcatcaattcatccaatcactcataaatttcaatcagtttatgatcacatcaacaacaa-gattaagtttttatcctgaacattatatta 900  T
Q  102 caagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaatttt 200  Q
    |||| | |||| || |||||||||||| ||||||||| |||| |||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  899 caagagtattatcatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaaactatgcaattaggtcaatttt 800  T
Q  201 cagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  799 cagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 3 - 254
Target Start/End: Complemental strand, 2143 - 1893
Alignment:
Q  3 tacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 102  Q
    ||||||||||||||||||||| |||||| |||| |||||||||||| |||||||||||||| |||||| ||||||||||||||| ||||||||| |||||    
T  2143 tacacaaattcatcaattcatacaatcactcatcaatttcaatcaagttatgatcacagcaacaacaaggattaagttttcattatgaacattaaattac 2044  T
Q  103 aagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaa-ttttc 201  Q
    ||| |||||||||  |||||||||||  | || ||| ||||||||| |||||||||||||||| ||||||||||||||||  |||||||||||| |||||    
T  2043 aagagaattaacataatcattaccca--ttccatcaaaatcatcatcaaaccctaaccctcaaattattttccaaaactatacaattaggtcaatttttc 1946  T
Q  202 agaaattatagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  1945 agaaattatagattatgattattgagatatagtctcacccttaccttagtttt 1893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 3 - 254
Target Start/End: Complemental strand, 8820 - 8570
Alignment:
Q  3 tacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattac 102  Q
    ||||||||||||||||||||| |||||| | || |||||||||||| |||||||||||||| |||||| ||||||||||||||| ||||||||| |||||    
T  8820 tacacaaattcatcaattcatacaatcacttatcaatttcaatcaagttatgatcacagcaacaacaaggattaagttttcattttgaacattaaattac 8721  T
Q  103 aagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaa-ttttc 201  Q
    ||| |||||||||  |||||||||||  | || ||| ||||||||| |||||||||||||||| ||||||||||||||||  |||||||||||| |||||    
T  8720 aagagaattaacataatcattaccca--ttccatcataatcatcatcaaaccctaaccctcaaattattttccaaaactatacaattaggtcaatttttc 8623  T
Q  202 agaaattatagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  8622 agaaattatagattatgattattgagatatagtctcacccttaccttagtttt 8570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 10 - 246
Target Start/End: Complemental strand, 14635 - 14399
Alignment:
Q  10 attcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaa 109  Q
    ||||||||||| ||||||||| |||||  ||||||||| ||||||||||||||| || || ||||||||||||||||| |||||| | |||||||  |||    
T  14635 attcatcaatttatccaatcaatcatat-tttcaatcagtttatgatcacagcaacagcatagattaagttttcattcggaacatcacattacaacagaa 14537  T
Q  110 ttaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttcc-aaaactaagcaattaggtcaattttcagaaatt 208  Q
    |||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||    
T  14536 ttaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaatt 14437  T
Q  209 atagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14436 atagattatgattattgagagatagtctcacccttacc 14399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 44477441 - 44477674
Alignment:
Q  11 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 110  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||| |||||||  ||||||  ||||    
T  44477441 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacgttacaacagaat 44477539  T
Q  111 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 210  Q
    ||||| ||||| |||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44477540 taacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattat 44477638  T
Q  211 agattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||||||||||||||||||||||    
T  44477639 agattatgattattgagagatagtctcacccttacc 44477674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 44492599 - 44492832
Alignment:
Q  11 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 110  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||| |||||||  ||||||  ||||    
T  44492599 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacgttacaacagaat 44492697  T
Q  111 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 210  Q
    ||||| ||||| |||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44492698 taacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattat 44492796  T
Q  211 agattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||||||||||||||||||||||    
T  44492797 agattatgattattgagagatagtctcacccttacc 44492832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 8727980 - 8727736
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||||||||||| ||||    
T  8727980 atacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattacatta 8727881  T
Q  102 caagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttcc-aaaactaagcaattaggtcaatttt 200  Q
    |||  ||||||||| ||||| ||||| || ||| ||||||||||| | ||||||||||||||||||||| |||| ||||||| |||||||||||||||||    
T  8727880 caacagaattaacatgatcaataccc-atacccctcagaatcatcgtcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaatttt 8727782  T
Q  201 cagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||    
T  8727781 cagaaattatagattatgattattgagggataatctcacccttacc 8727736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 23866422 - 23866674
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaa-tcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatt 100  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| ||| |||| ||||| |||| |||||| ||||||||||  |||||||||||||||||    
T  23866422 atacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcagagcaacaacaa-gattaagtttatattctgaacattatatt 23866520  T
Q  101 acaagg-gaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattt 199  Q
    ||||   ||||||||| |||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  23866521 acaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tt 23866619  T
Q  200 tcagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  23866620 tcaggaattataaattatgattattgagagatagtctcacccttaccttagtttt 23866674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 27941091 - 27940946
Alignment:
Q  11 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 110  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||| | || ||  | ||||||| |||||||||||||||||| |||||||  ||||    
T  27941091 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcataacaacagtatagattaaattttcattctgaacattacattacaacagaat 27940993  T
Q  111 taacacgatcattacccaattcccttcagaatcatcattaaaccctaa 158  Q
    ||||| ||||| ||||| |||||| ||||||||||||| |||||||||    
T  27940992 taacatgatcaataccc-attcccctcagaatcatcatcaaaccctaa 27940946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 136 - 246
Target Start/End: Original strand, 17054533 - 17054642
Alignment:
Q  136 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 235  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  17054533 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtc 17054631  T
Q  236 tcacccttacc 246  Q
    |||||||||||    
T  17054632 tcacccttacc 17054642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 193 - 304
Target Start/End: Original strand, 18614271 - 18614382
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagttttagaag-aaacgcacaacgaccagattctctgactatac 291  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||  |||||||| |||||||||| || | |||||||||||| |||    
T  18614271 tcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta-atttagaagaaaacgcacaatgatcggattctctgactctac 18614369  T
Q  292 ttgttcatctcac 304  Q
    |||||| ||||||    
T  18614370 ttgttcttctcac 18614382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 23482117 - 23482056
Alignment:
Q  185 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  23482117 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacc 23482056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 39364919 - 39364972
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||| || | ||| ||||||||||||||||||||||||||||    
T  39364919 tcaattttcagaaattctatactattattattgagagatagtctcacccttacc 39364972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 29643440 - 29643389
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||| | |||||||||||||| ||||| |||||||||||||    
T  29643440 aattttcagaaattacatattatgattattgaaagataatctcacccttacc 29643389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 14056619 - 14056567
Alignment:
Q  194 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||| ||| | | ||| ||||||||||||||||||||||||||||    
T  14056619 caattttcagaatttacatactattattattgagagatagtctcacccttacc 14056567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 25111976 - 25112028
Alignment:
Q  194 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||| ||| | | ||| ||||||||||||||||||||||||||||    
T  25111976 caattttcagaatttacatactattattattgagagatagtctcacccttacc 25112028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 24320725 - 24320674
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  24320725 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 24320674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 21931696 - 21931749
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||| ||||| ||||| || |||||||| ||| ||||||||||||    
T  21931696 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacc 21931749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 19661690 - 19661457
Alignment:
Q  11 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 110  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||| | |||||||||||||||||| ||||||| |||||||  ||||    
T  19661690 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattacattacaacagaat 19661592  T
Q  111 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 210  Q
    ||||| ||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  19661591 taacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattat 19661493  T
Q  211 agattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||| |||||| |||||||||||||||    
T  19661492 agattatgattatcgagagaaagtctcacccttacc 19661457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 6483536 - 6483769
Alignment:
Q  11 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 110  Q
    ||||||||||||||| |||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||| |||||||  ||||||  ||||    
T  6483536 ttcatcaattcatcccatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacgttacaacagaat 6483634  T
Q  111 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 210  Q
    ||||| ||||| |||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6483635 taacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattat 6483733  T
Q  211 agattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||||||||||||||||||||||    
T  6483734 agattatgattattgagagatagtctcacccttacc 6483769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 6487003 - 6487236
Alignment:
Q  11 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 110  Q
    ||||||||||||||| |||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||| |||||||  ||||||  ||||    
T  6487003 ttcatcaattcatcccatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacgttacaacagaat 6487101  T
Q  111 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattat 210  Q
    ||||| ||||| |||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6487102 taacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattat 6487200  T
Q  211 agattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||||||||||||||||||||||    
T  6487201 agattatgattattgagagatagtctcacccttacc 6487236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 81 - 254
Target Start/End: Original strand, 26583715 - 26583886
Alignment:
Q  81 ttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaac 180  Q
    |||||||||||||| |  ||||||   | |||||| |||||||||||  ||||| ||||||||||||| || ||||||||||||||||||||||||||||    
T  26583715 ttcattctgaacatcactttacaacatatttaacatgatcattaccct-ttcccctcagaatcatcatcaagccctaaccctcaatttattttccaaaac 26583813  T
Q  181 taagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26583814 tatgcaattaggtcaa-tttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 26583886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 2 - 246
Target Start/End: Original strand, 23878817 - 23879059
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||| || |||||||||||||||||||| |  ||  |||||||||||||||||||||| || ||  | |||||||| ||||||||||||||| | ||||    
T  23878817 atacaaaacttcatcaattcatccaatcaattctat-tttcaatcaatttatgatcacaacaacagtatagattaagatttcattctgaacatcacatta 23878915  T
Q  102 caagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttc 201  Q
    |||   |||||||| ||||||||||| |||||| ||||||||||||   ||||||||||||||||||| |   |||   ||||||||||||||||||||     
T  23878916 caacataattaacatgatcattaccccattcccctcagaatcatca-acaaccctaaccctcaatttaatcctcaaggttaagcaattaggtcaattttt 23879014  T
Q  202 agaaattatagattatgattattgagagatagtctcacccttacc 246  Q
     ||||||||| || || |||| |||||||||||||||||||||||    
T  23879015 cgaaattatatataattattaatgagagatagtctcacccttacc 23879059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 23089301 - 23089058
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||| || |||||||||||||||||||| | |||  ||||||||||||||||||||||||| ||  | |||||||| |||||||| |||| | | ||||    
T  23089301 atacagaacttcatcaattcatccaatcaattatat-tttcaatcaatttatgatcacagcaacagtatagattaagatttcattccgaacgtcacatta 23089203  T
Q  102 caagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttc 201  Q
    |||   |||||||| ||||||||||| |||||| | ||||||||||| |||||||||||||||||||  |   |||   |||||||||||||||||||||    
T  23089202 caacataattaacatgatcattaccc-attccccttagaatcatcatcaaaccctaaccctcaattttatcctcaaggttaagcaattaggtcaattttc 23089104  T
Q  202 agaaattatagattat-gattattgagagatagtctcacccttacc 246  Q
     ||||||| | |||||  |||| |||||||||||||||||||||||    
T  23089103 cgaaattaaatattatctattaatgagagatagtctcacccttacc 23089058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 23101709 - 23101466
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||| || ||||| |||||||||||||| | |||  |||||||||||||||||||||| || ||  | |||||||| |||||||| |||| | | ||||    
T  23101709 atacagaacttcatgaattcatccaatcaattatat-tttcaatcaatttatgatcacaacaacagtatagattaagatttcattccgaacgtcacatta 23101611  T
Q  102 caagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttc 201  Q
    |||   |||||||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||||  |   |||   ||| |||||||||||||||||    
T  23101610 caacataattaacatgatcattaccc-attcccctcagaatcatcatcaaaccctaaccctcaattttatcctcaaggttaaacaattaggtcaattttc 23101512  T
Q  202 agaaattatagattat-gattattgagagatagtctcacccttacc 246  Q
     ||||||| | |||||  |||| |||||||||||||||||||||||    
T  23101511 cgaaattacatattatctattaatgagagatagtctcacccttacc 23101466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 136 - 246
Target Start/End: Complemental strand, 5706137 - 5706027
Alignment:
Q  136 tcagaatcatcattaaaccctaaccctca-atttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagt 234  Q
    ||||||||||||| |||||||||   ||| |||  ||||| |||||||  |||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  5706137 tcagaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattaatgagagatagt 5706039  T
Q  235 ctcacccttacc 246  Q
    ||||||||||||    
T  5706038 ctcacccttacc 5706027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 23265133 - 23265194
Alignment:
Q  185 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  23265133 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacc 23265194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 23280201 - 23280262
Alignment:
Q  185 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  23280201 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacc 23280262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 21908353 - 21908411
Alignment:
Q  188 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  21908353 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacc 21908411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 24661576 - 24661629
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||||| |||||||| || ||||| ||| ||||||||||||    
T  24661576 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacc 24661629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 10577 - 10628
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  10577 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 10628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 25180984 - 25180933
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  25180984 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 25180933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 26885133 - 26885233
Alignment:
Q  146 cattaaaccctaaccctcaatttattttccaa-aactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccctta 244  Q
    ||||| |||||||  |||||||| || ||||| |||||  | ||||| | ||||||||||||||||| |||| ||||||||| ||||| || ||||||||    
T  26885133 cattataccctaattctcaattttttctccaagaactattccattagattaattttcagaaattatacatta-gattattgaaagataatcccaccctta 26885231  T
Q  245 cc 246  Q
    ||    
T  26885232 cc 26885233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 20437261 - 20437027
Alignment:
Q  11 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 110  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||||||||||| |||||||   |||    
T  20437261 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattacattacaacataat 20437163  T
Q  111 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaatta 209  Q
    ||||| ||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  20437162 taacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaatta 20437064  T
Q  210 tagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||||||||||||||||||||||    
T  20437063 tagattatgattattgagagatagtctcacccttacc 20437027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 41111977 - 41112094
Alignment:
Q  136 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 235  Q
    ||||||||||||| ||||||||||  |||  ||||||| ||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41111977 tcagaatcatcatcaaaccctaactttcatcttatttttcaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 41112075  T
Q  236 tcacccttaccatagtttt 254  Q
    ||||||||||| |||||||    
T  41112076 tcacccttaccttagtttt 41112094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 304
Target Start/End: Original strand, 32651563 - 32651682
Alignment:
Q  185 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagttttagaag-aaacgcacaacgaccagattctct 283  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||  |||||||| |||| |||||||| | ||||||||    
T  32651563 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta-atttagaagaaaacacacaacgatcggattctct 32651661  T
Q  284 gactatacttgttcatctcac 304  Q
    ||||  |||||||| ||||||    
T  32651662 gactccacttgttcttctcac 32651682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 18712790 - 18712851
Alignment:
Q  185 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||| ||||    
T  18712790 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccatacc 18712851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 19663572 - 19663520
Alignment:
Q  194 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||||||||    
T  19663572 caattttcagaaattatatactatgattatcgagagatagtctcacccttacc 19663520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 10811839 - 10811786
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||| || | ||| ||||||||||||||||||||||||||||    
T  10811839 tcaattttcagaaattctacactattattattgagagatagtctcacccttacc 10811786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 20805320 - 20805373
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||    
T  20805320 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacc 20805373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 11158093 - 11158145
Alignment:
Q  194 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||| |||| ||| |||||||| ||||||||||||||||    
T  11158093 caattttcagaaattatatattaagatcattgagagttagtctcacccttacc 11158145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 20851187 - 20851136
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  20851187 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 20851136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 20857814 - 20857763
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  20857814 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 20857763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 21706276 - 21706327
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  21706276 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 21706327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 21710818 - 21710869
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  21710818 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 21710869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 11150 - 11401
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||| || |||||||||||||||||||| | |||  ||||||||||||| ||||||||||| ||  |  ||||||| ||||||| ||||||| | ||||    
T  11150 atacaaaacttcatcaattcatccaatcaattatat-tttcaatcaatttgtgatcacagcaacagtatggattaagatttcattttgaacatcacatta 11248  T
Q  102 caagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatt-tattttccaaaactaagcaattaggtcaatttt 200  Q
    |||  ||||||||| ||||||||| || |||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11249 caacagaattaacatgatcattactca-ttccctccagaatcatcatcaaaccctaaccctcaattctattttccaaaactaagcaattaggtcaatttt 11347  T
Q  201 cagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11348 cagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 11401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 10433 - 10199
Alignment:
Q  11 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 110  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||| ||||||| |||||||  ||||    
T  10433 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacattacaacagaat 10335  T
Q  111 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaatta 209  Q
    ||||| ||||| |||||| ||||| ||||||||||||| |||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  10334 taacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaatta 10236  T
Q  210 tagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||||||||||| ||||||||||    
T  10235 tagattatgattattgagagatagtcccacccttacc 10199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 1763 - 1529
Alignment:
Q  11 ttcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaat 110  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||| || ||  | |||||||||||||||||| ||||||| |||||||  ||||    
T  1763 ttcatcaattcatccaatcaatcataa-tttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacattacaacagaat 1665  T
Q  111 taacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaatta 209  Q
    ||||| ||||| |||||| ||||| ||||||||||||| |||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  1664 taacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaatta 1566  T
Q  210 tagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||||||||||| ||||||||||    
T  1565 tagattatgattattgagagatagtcccacccttacc 1529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 109 - 350
Alignment:
Q  10 attcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaa 109  Q
    ||||||||||| |||||| || |||||| |||||| ||||||||||||||| ||  |||| ||||||||| |||| ||||||||  ||| ||||||  ||    
T  109 attcatcaatttatccaaccaatcataa-tttcaaccaatttatgatcacatcaataacatagattaagtcttcaatctgaacaccataatacaagaaaa 207  T
Q  110 ttaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaatta 209  Q
    |||||| |||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  208 ttaacatgatcattaccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcagaaatta 305  T
Q  210 tagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||    
T  306 tagattatggttattgagagatagtctcacccttaccttagtttt 350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 17985 - 18229
Alignment:
Q  10 attcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagg-ga 108  Q
    ||||||||||| ||||||||| ||  ||||||||||||||| |||||||||||| ||||| || |||||||||||||||| |||| | |||||||   ||    
T  17985 attcatcaatttatccaatcaatcc-aaatttcaatcaattcatgatcacagcaacaacataggttaagttttcattctggacatcacattacaaacaga 18083  T
Q  109 attaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaat 207  Q
    ||||||| || ||||||| | ||||| | ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  18084 attaacatgaccattacc-atttcccgttagaatcatcattaaaccttaaccctcaatttattttcctaaagctaagcaattaggtcaattttcaaaaat 18182  T
Q  208 tatagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  18183 tatagattatgattattgagagatagtctcacccttaccttagtttt 18229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 167 - 302
Target Start/End: Original strand, 904 - 1039
Alignment:
Q  167 ttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagttttagaagaaacgca 266  Q
    |||| |||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  904 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagttttagaagaaacgca 1003  T
Q  267 caacgaccagattctctgactatacttgttcatctc 302  Q
    |||||||| |||||||||||||||||||||| ||||    
T  1004 caacgaccggattctctgactatacttgttcttctc 1039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 167 - 302
Target Start/End: Original strand, 8049 - 8184
Alignment:
Q  167 ttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagttttagaagaaacgca 266  Q
    |||| |||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8049 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagttttagaagaaacgca 8148  T
Q  267 caacgaccagattctctgactatacttgttcatctc 302  Q
    |||||||| |||||||||||| ||||||||| ||||    
T  8149 caacgaccggattctctgactctacttgttcttctc 8184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 806 - 899
Alignment:
Q  10 attcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaa 104  Q
    ||||||||||| ||||||||  |||||| || |||||||||||||||||||||| ||||| |||||||||||||||||||||||| | |||||||    
T  806 attcatcaatttatccaatccctcataa-ttccaatcaatttatgatcacagcaacaacacagattaagttttcattctgaacatcacattacaa 899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 7951 - 8044
Alignment:
Q  10 attcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaa 104  Q
    ||||||||||| ||||||||  |||||| || |||||||||||||||||||||| ||||| |||||||||||||||||||||||| | |||||||    
T  7951 attcatcaatttatccaatccctcataa-ttccaatcaatttatgatcacagcaacaacacagattaagttttcattctgaacatcacattacaa 8044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 3540 - 3296
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||| || |||||||||||||||||||| | |||  ||||||||||||| ||||||||||| ||  | |||||||| ||||||||||||||| | ||||    
T  3540 atacaaaacttcatcaattcatccaatcaattatat-tttcaatcaatttgtgatcacagcaacagtatagattaagatttcattctgaacatcacatta 3442  T
Q  102 caagggaattaacacga-tcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaatttt 200  Q
    |||   |||||||| || ||||||||| |||||| ||||||||||||| |||||||||||||||||||  |  ||||   ||||||||||||||||||||    
T  3441 caacaaaattaacatgattcattaccc-attcccctcagaatcatcatcaaaccctaaccctcaattttatccccaaggttaagcaattaggtcaatttt 3343  T
Q  201 cagaaattatagattat-gattattgagagatagtctcacccttacc 246  Q
    | ||||||| | |||||  |||| |||||||||||||||||||||||    
T  3342 ccgaaattacatattatctattaatgagagatagtctcacccttacc 3296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 110 - 254
Target Start/End: Original strand, 30772 - 30917
Alignment:
Q  110 ttaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt-attttccaaaactaagcaattaggtcaattttcagaaatt 208  Q
    |||||| |||| |||| | |||||| ||| ||||||||| ||||||||| ||||||||| |  ||||||||||| |||||||||||||||||||||||||    
T  30772 ttaacatgatcgttacaccattcccctcaaaatcatcatcaaaccctaatcctcaattttaccttccaaaactatgcaattaggtcaattttcagaaatt 30871  T
Q  209 atagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  30872 atagattatgattattgagagatagtctcacccttaccttagtttt 30917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 3868 - 3625
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatatta 101  Q
    ||||| || |||||||||||||||||||| | |||  |||||||||||||||||||||| || ||  | |||||||| |||||||| |||||| | ||||    
T  3868 atacaaaacttcatcaattcatccaatcaattatat-tttcaatcaatttatgatcacaacaacagtatagattaagatttcattccgaacatcacatta 3770  T
Q  102 caagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttc 201  Q
    |||   |||||||| ||||||||||| || ||| ||||||||||||| |||||||||||||||||||  |   |||   |||||||||||||||||||||    
T  3769 caacataattaacatgatcattaccc-atccccctcagaatcatcatcaaaccctaaccctcaattttatcctcaaggttaagcaattaggtcaattttc 3671  T
Q  202 agaaattatagattat-gattattgagagatagtctcacccttacc 246  Q
     ||||||| | |||||  |||| |||||||||||||||||||||||    
T  3670 cgaaattacatattatctattaatgagagatagtctcacccttacc 3625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 3470 - 3558
Alignment:
Q  2 atacacaaattcatcaattcatccaatcattcataaatttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctga 90  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3470 atacacaaattcatcaattcatccaatcacccataaatttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctga 3558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 136 - 254
Target Start/End: Complemental strand, 1845 - 1728
Alignment:
Q  136 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 235  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  1845 tcagaatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtc 1747  T
Q  236 tcacccttaccatagtttt 254  Q
    ||||||||||| |||||||    
T  1746 tcacccttaccttagtttt 1728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 136 - 254
Target Start/End: Complemental strand, 5868 - 5751
Alignment:
Q  136 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 235  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  5868 tcagaatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtc 5770  T
Q  236 tcacccttaccatagtttt 254  Q
    ||||||||||| |||||||    
T  5769 tcacccttaccttagtttt 5751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 185 - 296
Target Start/End: Original strand, 116887 - 116998
Alignment:
Q  185 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagttttagaag-aaacgcacaacgaccagattctct 283  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||  |||||||| |||| |||||||| | ||||||||    
T  116887 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta-atttagaagaaaacacacaacgatcggattctct 116985  T
Q  284 gactatacttgtt 296  Q
    ||||  |||||||    
T  116986 gactccacttgtt 116998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 45386 - 45278
Alignment:
Q  138 agaatcatcattaaaccctaaccctca-atttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtct 236  Q
    ||||||||||| |||||||||   ||| |||  ||||| |||||||  |||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  45386 agaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtct 45288  T
Q  237 cacccttacc 246  Q
    ||||||||||    
T  45287 cacccttacc 45278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 16811 - 16872
Alignment:
Q  185 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  16811 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacc 16872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 72 - 11
Alignment:
Q  185 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||||||||    
T  72 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacc 11  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 13623 - 13684
Alignment:
Q  185 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||||||||    
T  13623 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacc 13684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 101992 - 101931
Alignment:
Q  185 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||| ||||||||||| ||||||| | ||||||||||||||||||||||||||||||||    
T  101992 caattagatcaattttcaggaattatatactatgattattgagagatagtctcacccttacc 101931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 17643 - 17695
Alignment:
Q  194 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  17643 caattttcagaaattatacattatggttattgagagatagtctcacccttacc 17695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 40587 - 40535
Alignment:
Q  194 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  40587 caattttcagaaattatatactatgattattgagagatagtctcacccttacc 40535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 135473 - 135525
Alignment:
Q  194 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  135473 caattttcagaaattatatactatgattattgagagatagtctcacccttacc 135525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 22646 - 22596
Alignment:
Q  196 attttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttacc 22596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 34331 - 34279
Alignment:
Q  194 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||||||||    
T  34331 caattttcagaaattatatactatgattatcgagagatagtctcacccttacc 34279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 12296 - 12349
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||    
T  12296 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacc 12349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 1378 - 1438
Alignment:
Q  186 aattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||| |||||||||| |||||||| || ||||| ||||| |||||||||||||||||||    
T  1378 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacc 1438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 15052 - 15000
Alignment:
Q  194 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||||||| |||| ||| |||||||| ||||||||||||||||    
T  15052 caattttcagaaattatatattaagatcattgagagttagtctcacccttacc 15000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 39563 - 39510
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||| ||||||||| |||||||| |||||||| ||| ||||||||||||    
T  39563 tcaattttctgaaattatatattatgatcattgagagttagcctcacccttacc 39510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 1453 - 1501
Alignment:
Q  198 tttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    |||||||||||||| |||| ||| |||||||| ||||||||||||||||    
T  1453 tttcagaaattatacattaagatcattgagagttagtctcacccttacc 1501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 1967 - 1916
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  1967 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 1916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 9336 - 9387
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  9336 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 9387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 10239 - 10290
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||| | |||||||||||||  ||||| |||||||||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttacc 10290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 135438 - 135489
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||| ||||||| |||||| ||||| |||||| ||||||    
T  135438 aattttcagaaattatatattatgactattgaaagataatctcacgcttacc 135489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 493082 - 493032
Alignment:
Q  195 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||||||| |||| ||||||||| ||||| |||||||||||||    
T  493082 aattttcagaaattatacatta-gattattgaaagataatctcacccttacc 493032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 680 - 774
Alignment:
Q  161 ctcaatttattttccaaaactaagcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 254  Q
    |||||||||||||| | |||||  |  |||||| |||||| ||||||||||| |||| ||| ||||| ||||| || |||||||||| |||||||    
T  680 ctcaatttattttcaagaactattcttttaggttaatttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagtttt 774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 5922 - 5861
Alignment:
Q  185 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||| | ||||||||||||||||| ||||| || ||||| ||||| || ||||||||||    
T  5922 caattagattaattttcagaaattatatattataatcattgaaagataatcccacccttacc 5861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 2684 - 2631
Alignment:
Q  193 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 246  Q
    ||||||||||||| ||||| ||||| || |||||||| ||| ||||||||||||    
T  2684 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacc 2631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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