View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19341_high_2 (Length: 558)

Name: NF19341_high_2
Description: NF19341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19341_high_2
NF19341_high_2
[»] chr4 (15 HSPs)
chr4 (333-546)||(27391298-27391511)
chr4 (40-160)||(27391186-27391306)
chr4 (157-194)||(52392263-52392300)
chr4 (158-194)||(23347772-23347808)
chr4 (284-332)||(40409055-40409103)
chr4 (161-193)||(40409205-40409237)
chr4 (159-194)||(51039154-51039189)
chr4 (284-333)||(1033282-1033331)
chr4 (161-194)||(6953426-6953459)
chr4 (307-336)||(30973740-30973769)
chr4 (284-333)||(42915107-42915156)
chr4 (161-194)||(46566929-46566962)
chr4 (284-332)||(15596530-15596578)
chr4 (295-335)||(30778150-30778190)
chr4 (158-194)||(37547062-37547098)
[»] chr7 (12 HSPs)
chr7 (284-333)||(45607158-45607207)
chr7 (284-331)||(47193061-47193108)
chr7 (284-333)||(155869-155918)
chr7 (161-194)||(45607024-45607057)
chr7 (284-332)||(25887717-25887765)
chr7 (160-194)||(40842404-40842438)
chr7 (161-194)||(156020-156053)
chr7 (161-194)||(25887594-25887627)
chr7 (161-193)||(27778079-27778111)
chr7 (294-334)||(27778206-27778246)
chr7 (305-333)||(41966483-41966511)
chr7 (150-194)||(48866968-48867012)
[»] chr3 (7 HSPs)
chr3 (284-336)||(7293984-7294036)
chr3 (284-334)||(51672997-51673047)
chr3 (161-191)||(51672863-51672893)
chr3 (161-194)||(7294138-7294171)
chr3 (284-333)||(20380777-20380826)
chr3 (161-194)||(24537219-24537252)
chr3 (284-332)||(29706037-29706085)
[»] chr1 (4 HSPs)
chr1 (284-335)||(30631731-30631782)
chr1 (161-194)||(7078538-7078571)
chr1 (161-194)||(10384211-10384244)
chr1 (285-333)||(49453612-49453660)
[»] scaffold0508 (2 HSPs)
scaffold0508 (160-194)||(11574-11608)
scaffold0508 (288-333)||(11424-11469)
[»] chr6 (7 HSPs)
chr6 (284-334)||(26378272-26378322)
chr6 (294-333)||(10521267-10521306)
chr6 (284-331)||(24752365-24752412)
chr6 (161-194)||(12441538-12441571)
chr6 (296-333)||(15722390-15722427)
chr6 (307-335)||(1434562-1434590)
chr6 (158-194)||(35213599-35213635)
[»] chr5 (15 HSPs)
chr5 (161-194)||(1774321-1774354)
chr5 (284-333)||(11767878-11767927)
chr5 (284-333)||(19127258-19127307)
chr5 (285-332)||(1774174-1774221)
chr5 (159-194)||(5130405-5130440)
chr5 (294-332)||(10232644-10232682)
chr5 (284-334)||(11306830-11306880)
chr5 (160-194)||(12661985-12662019)
chr5 (161-194)||(125092-125125)
chr5 (284-333)||(2117528-2117577)
chr5 (161-194)||(11768028-11768061)
chr5 (161-194)||(14780459-14780492)
chr5 (161-194)||(30838403-30838436)
chr5 (158-194)||(19127121-19127157)
chr5 (158-194)||(39595269-39595305)
[»] chr2 (12 HSPs)
chr2 (161-194)||(5067684-5067717)
chr2 (284-332)||(11229210-11229258)
chr2 (159-194)||(21490701-21490736)
chr2 (161-191)||(34139079-34139109)
chr2 (161-194)||(5455491-5455524)
chr2 (161-194)||(11229359-11229392)
chr2 (284-333)||(13711195-13711244)
chr2 (284-333)||(36133108-36133157)
chr2 (161-194)||(43725216-43725249)
chr2 (284-336)||(11164261-11164313)
chr2 (294-334)||(12962530-12962570)
chr2 (158-194)||(31629601-31629637)
[»] chr8 (10 HSPs)
chr8 (288-331)||(7325852-7325895)
chr8 (285-334)||(1179511-1179560)
chr8 (161-194)||(6004944-6004977)
chr8 (161-194)||(7279993-7280026)
chr8 (285-334)||(21273597-21273646)
chr8 (285-334)||(24946134-24946183)
chr8 (158-194)||(9985716-9985752)
chr8 (158-194)||(16613631-16613667)
chr8 (295-331)||(20473924-20473960)
chr8 (158-194)||(32174951-32174987)
[»] scaffold0002 (1 HSPs)
scaffold0002 (156-194)||(440713-440751)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 333 - 546
Target Start/End: Original strand, 27391298 - 27391511
Alignment:
Q  333 tattcctattacatcactaacatgtcacatcttttacatcatcctctatatttctttatctcccaaagtgtcaattgagttttgggtttctcaaatattt 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27391298 tattcctattacatcactaacatgtcacatcttttacatcatcctctatatttctttatctcccaaagtgtcaattgagttttgggtttctcaaatattt 27391397  T
Q  433 tcctatttagaatgagcaaaccaatcttactcttaaaaatagacatgtatgatgatttaaggacattaccatctatccaaatattttaaaatttgtctat 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27391398 tcctatttagaatgagcaaaccaatcttactcttaaaaatagacatgtatgatgatttaaggacattaccatctatccaaatattttaaaatttgtctat 27391497  T
Q  533 atactacatgtctc 546  Q
    ||||||||||||||    
T  27391498 atactacatgtctc 27391511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 40 - 160
Target Start/End: Original strand, 27391186 - 27391306
Alignment:
Q  40 aagatattaacatttgttatnnnnnnntaataatgatatgtgaacatctttctaattctcatattatcattccacacctcattttctcatatactaaatc 139  Q
    ||||||||||||||||||||       ||||||| ||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  27391186 aagatattaacatttgttataaaaaaataataataatatgtgaacacctctctaattctcatattatcattccacacttcattttctcatatactaattc 27391285  T
Q  140 tcaatatcttcatattcctat 160  Q
    |||||||||| ||||||||||    
T  27391286 tcaatatctttatattcctat 27391306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 52392300 - 52392263
Alignment:
Q  157 ctatgagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  52392300 ctatgagaaatgatatttgtacatccactttgtgacaa 52392263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 23347772 - 23347808
Alignment:
Q  158 tatgagaaatgatatttgtacatctactttgtgacaa 194  Q
    |||||||||||||||||||||||| ||||||||||||    
T  23347772 tatgagaaatgatatttgtacatccactttgtgacaa 23347808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 40409103 - 40409055
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactc 332  Q
    ||||||||| ||||||||   ||||||||||||||||||||||||||||    
T  40409103 gaagttgtaccaaaagttggctaaaatagttgttcaaatatcactactc 40409055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 40409237 - 40409205
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgaca 193  Q
    |||||||||||||||||||||||||||||||||    
T  40409237 gagaaatgatatttgtacatctactttgtgaca 40409205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 194
Target Start/End: Complemental strand, 51039189 - 51039154
Alignment:
Q  159 atgagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||||| ||||||||||||||    
T  51039189 atgagaaatgatatttgtacaactactttgtgacaa 51039154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 1033282 - 1033331
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactct 333  Q
    ||||||||  |||||||| | |||||| ||||||||||||||||||||||    
T  1033282 gaagttgtcacaaaagttgtttaaaatggttgttcaaatatcactactct 1033331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 6953459 - 6953426
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||||| ||||||||||||    
T  6953459 gagaaatgatatttgtacatccactttgtgacaa 6953426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 336
Target Start/End: Original strand, 30973740 - 30973769
Alignment:
Q  307 aaatagttgttcaaatatcactactctatt 336  Q
    ||||||||||||||||||||||||||||||    
T  30973740 aaatagttgttcaaatatcactactctatt 30973769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 42915156 - 42915107
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactct 333  Q
    ||||||||  |||||||| | | |||||||||||||||||||||||||||    
T  42915156 gaagttgtcacaaaagttgtatcaaatagttgttcaaatatcactactct 42915107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 46566929 - 46566962
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||||| ||||||||||||    
T  46566929 gagaaatgatatttgtacatccactttgtgacaa 46566962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 15596530 - 15596578
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactc 332  Q
    ||||||||  |||||||| | |||||| |||||||||||||||||||||    
T  15596530 gaagttgtcacaaaagttgtttaaaatggttgttcaaatatcactactc 15596578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 30778190 - 30778150
Alignment:
Q  295 aaaagttatgtaaaatagttgttcaaatatcactactctat 335  Q
    ||||||||| | |||||||||||||||||||| ||||||||    
T  30778190 aaaagttatatcaaatagttgttcaaatatcattactctat 30778150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 37547062 - 37547098
Alignment:
Q  158 tatgagaaatgatatttgtacatctactttgtgacaa 194  Q
    |||||||||||||||||||||| | ||||||||||||    
T  37547062 tatgagaaatgatatttgtacaaccactttgtgacaa 37547098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 45607158 - 45607207
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactct 333  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  45607158 gaagttgtaccaaaagttatctaaaatagttgttcaaatatcactactct 45607207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 47193061 - 47193108
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactact 331  Q
    ||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  47193061 gaagttgtaccaaaagttatctaaaatggttgttcaaatatcactact 47193108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 155918 - 155869
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactct 333  Q
    ||||||||| |||||||| | |||||| ||||||||||||||||||||||    
T  155918 gaagttgtatcaaaagttgtctaaaatggttgttcaaatatcactactct 155869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 45607024 - 45607057
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||||||||||||||||||    
T  45607024 gagaaatgatatttgtacatctactttgtgacaa 45607057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 25887717 - 25887765
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactc 332  Q
    ||||||||| |||||||| | |||||| |||||||||||||||||||||    
T  25887717 gaagttgtaccaaaagttgtctaaaatggttgttcaaatatcactactc 25887765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 40842404 - 40842438
Alignment:
Q  160 tgagaaatgatatttgtacatctactttgtgacaa 194  Q
    |||||||||||||||||||||| ||||||||||||    
T  40842404 tgagaaatgatatttgtacatccactttgtgacaa 40842438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 156053 - 156020
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||||| ||||||||||||    
T  156053 gagaaatgatatttgtacatccactttgtgacaa 156020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 25887594 - 25887627
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||||| ||||||||||||    
T  25887594 gagaaatgatatttgtacatccactttgtgacaa 25887627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 27778079 - 27778111
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgaca 193  Q
    ||||||||||||||||||| |||||||||||||    
T  27778079 gagaaatgatatttgtacaactactttgtgaca 27778111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 27778206 - 27778246
Alignment:
Q  294 caaaagttatgtaaaatagttgttcaaatatcactactcta 334  Q
    |||||||||| | |||| |||||||||||||||||||||||    
T  27778206 caaaagttatatgaaatggttgttcaaatatcactactcta 27778246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 41966483 - 41966511
Alignment:
Q  305 taaaatagttgttcaaatatcactactct 333  Q
    |||||||||||||||||||||||||||||    
T  41966483 taaaatagttgttcaaatatcactactct 41966511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 48867012 - 48866968
Alignment:
Q  150 catattcctatgagaaatgatatttgtacatctactttgtgacaa 194  Q
    |||||||  ||||||||||||||||||||| | ||||||||||||    
T  48867012 catattcacatgagaaatgatatttgtacagccactttgtgacaa 48866968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 7294036 - 7293984
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactctatt 336  Q
    ||||||||| |||||||| | |||||| |||||||||||||||||||||||||    
T  7294036 gaagttgtatcaaaagttgtctaaaatggttgttcaaatatcactactctatt 7293984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 51672997 - 51673047
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactcta 334  Q
    ||||||||| |||||||| | |||||| |||||||||||||||||||||||    
T  51672997 gaagttgtaccaaaagttgtctaaaatggttgttcaaatatcactactcta 51673047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 191
Target Start/End: Original strand, 51672863 - 51672893
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtga 191  Q
    |||||||||||||||||||||||||||||||    
T  51672863 gagaaatgatatttgtacatctactttgtga 51672893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 7294171 - 7294138
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||||| ||||||||||||    
T  7294171 gagaaatgatatttgtacatccactttgtgacaa 7294138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 20380826 - 20380777
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactct 333  Q
    ||||||||  |||||||| | |||||| ||||||||||||||||||||||    
T  20380826 gaagttgtcacaaaagttgtttaaaatggttgttcaaatatcactactct 20380777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 24537219 - 24537252
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||||| ||||||||||||    
T  24537219 gagaaatgatatttgtacatccactttgtgacaa 24537252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 29706037 - 29706085
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactc 332  Q
    ||||||||  |||||||| | | ||||||||||||||||||||||||||    
T  29706037 gaagttgtcacaaaagttgtatcaaatagttgttcaaatatcactactc 29706085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 30631782 - 30631731
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactctat 335  Q
    ||||||||| |||||||| | |||||| ||||||||||||||||||||||||    
T  30631782 gaagttgtaccaaaagttgtctaaaatggttgttcaaatatcactactctat 30631731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 7078571 - 7078538
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||||||| ||||||||||    
T  7078571 gagaaatgatatttgtacatctattttgtgacaa 7078538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 10384211 - 10384244
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||| ||||||||||||||    
T  10384211 gagaaatgatatttgtacaactactttgtgacaa 10384244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 49453612 - 49453660
Alignment:
Q  285 aagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactct 333  Q
    |||||||  |||||||| | | |||||||||||||||||||||||||||    
T  49453612 aagttgtcacaaaagttgtatcaaatagttgttcaaatatcactactct 49453660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 11608 - 11574
Alignment:
Q  160 tgagaaatgatatttgtacatctactttgtgacaa 194  Q
    |||||||||||||||||||||||||||||||||||    
T  11608 tgagaaatgatatttgtacatctactttgtgacaa 11574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 11469 - 11424
Alignment:
Q  288 ttgtagcaaaagttatgtaaaatagttgttcaaatatcactactct 333  Q
    ||||| |||||||| | |||||||||||||||||||||||||||||    
T  11469 ttgtatcaaaagttgtctaaaatagttgttcaaatatcactactct 11424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 26378322 - 26378272
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactcta 334  Q
    ||||||||| |||||||| | |||||| |||||||||||||||||||||||    
T  26378322 gaagttgtatcaaaagttgtctaaaatggttgttcaaatatcactactcta 26378272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 333
Target Start/End: Original strand, 10521267 - 10521306
Alignment:
Q  294 caaaagttatgtaaaatagttgttcaaatatcactactct 333  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  10521267 caaaaattatataaaatagttgttcaaatatcactactct 10521306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 24752365 - 24752412
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactact 331  Q
    ||||||||| |||||||| | |||||| ||||||||||||||||||||    
T  24752365 gaagttgtaccaaaagttgtctaaaatggttgttcaaatatcactact 24752412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 12441538 - 12441571
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||| ||||||||||||||    
T  12441538 gagaaatgatatttgtacaactactttgtgacaa 12441571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 15722427 - 15722390
Alignment:
Q  296 aaagttatgtaaaatagttgttcaaatatcactactct 333  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  15722427 aaagttatctaaaatagttgttcaaatatcaatactct 15722390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 1434590 - 1434562
Alignment:
Q  307 aaatagttgttcaaatatcactactctat 335  Q
    |||||||||||||||||||||||||||||    
T  1434590 aaatagttgttcaaatatcactactctat 1434562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 35213635 - 35213599
Alignment:
Q  158 tatgagaaatgatatttgtacatctactttgtgacaa 194  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  35213635 tatgagaaatgatatttgaacatctattttgtgacaa 35213599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 1774354 - 1774321
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||||||||||||||||||    
T  1774354 gagaaatgatatttgtacatctactttgtgacaa 1774321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 11767927 - 11767878
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactct 333  Q
    ||||||||| |||||||| | |||||| ||||||||||||||||||||||    
T  11767927 gaagttgtaccaaaagttgtctaaaatggttgttcaaatatcactactct 11767878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 19127258 - 19127307
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactct 333  Q
    |||||||| ||||||||| | |||||| ||||||||||||||||||||||    
T  19127258 gaagttgtcgcaaaagttgtttaaaatggttgttcaaatatcactactct 19127307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 1774221 - 1774174
Alignment:
Q  285 aagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactc 332  Q
    |||||||| ||||| || | ||||||||||||||||||||||||||||    
T  1774221 aagttgtaccaaaaattgtctaaaatagttgttcaaatatcactactc 1774174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 194
Target Start/End: Complemental strand, 5130440 - 5130405
Alignment:
Q  159 atgagaaatgatatttgtacatctactttgtgacaa 194  Q
    |||||||||||||| |||||||||||||||||||||    
T  5130440 atgagaaatgatatatgtacatctactttgtgacaa 5130405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 10232644 - 10232682
Alignment:
Q  294 caaaagttatgtaaaatagttgttcaaatatcactactc 332  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  10232644 caaaagttgtataaaatagttgttcaaatatcactactc 10232682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 11306830 - 11306880
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactcta 334  Q
    ||||||||  |||||||| | | ||||||||||||||||||||||||||||    
T  11306830 gaagttgtctcaaaagttgtatcaaatagttgttcaaatatcactactcta 11306880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 12662019 - 12661985
Alignment:
Q  160 tgagaaatgatatttgtacatctactttgtgacaa 194  Q
    |||||||||||||||||||||| ||||||||||||    
T  12662019 tgagaaatgatatttgtacatccactttgtgacaa 12661985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 125092 - 125125
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||| ||||||||||||||    
T  125092 gagaaatgatatttgtacaactactttgtgacaa 125125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 2117577 - 2117528
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactct 333  Q
    ||||||||  |||||||| | | |||||||||||||||||||||||||||    
T  2117577 gaagttgtcacaaaagttgtatcaaatagttgttcaaatatcactactct 2117528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 11768061 - 11768028
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||||| ||||||||||||    
T  11768061 gagaaatgatatttgtacatccactttgtgacaa 11768028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 14780492 - 14780459
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||||||||||| ||||||    
T  14780492 gagaaatgatatttgtacatctactttttgacaa 14780459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 30838436 - 30838403
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||||||||||| ||||||    
T  30838436 gagaaatgatatttgtacatctactttttgacaa 30838403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 19127121 - 19127157
Alignment:
Q  158 tatgagaaatgatatttgtacatctactttgtgacaa 194  Q
    |||||||||||||||||||||| | ||||||||||||    
T  19127121 tatgagaaatgatatttgtacaaccactttgtgacaa 19127157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 39595269 - 39595305
Alignment:
Q  158 tatgagaaatgatatttgtacatctactttgtgacaa 194  Q
    |||||||||||||||||||||| | ||||||||||||    
T  39595269 tatgagaaatgatatttgtacaaccactttgtgacaa 39595305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 5067717 - 5067684
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||||||||||||||||||    
T  5067717 gagaaatgatatttgtacatctactttgtgacaa 5067684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 11229258 - 11229210
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactc 332  Q
    ||||||||| |||||||| | |||||| |||||||||||||||||||||    
T  11229258 gaagttgtaccaaaagttgtctaaaatggttgttcaaatatcactactc 11229210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 194
Target Start/End: Original strand, 21490701 - 21490736
Alignment:
Q  159 atgagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||||| ||||||||||||||    
T  21490701 atgagaaatgatatttgtacaactactttgtgacaa 21490736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 191
Target Start/End: Complemental strand, 34139109 - 34139079
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtga 191  Q
    |||||||||||||||||||||||||||||||    
T  34139109 gagaaatgatatttgtacatctactttgtga 34139079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 5455524 - 5455491
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||||| ||||||||||||    
T  5455524 gagaaatgatatttgtacatccactttgtgacaa 5455491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 11229392 - 11229359
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||||| ||||||||||||    
T  11229392 gagaaatgatatttgtacatccactttgtgacaa 11229359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 13711195 - 13711244
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactct 333  Q
    ||||||||  |||||||| |  ||||||||||||||||||||||||||||    
T  13711195 gaagttgtcacaaaagttgtacaaaatagttgttcaaatatcactactct 13711244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 36133108 - 36133157
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactct 333  Q
    ||||||||  |||||||| | | |||||||||||||||||||||||||||    
T  36133108 gaagttgtcacaaaagttgtatgaaatagttgttcaaatatcactactct 36133157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 43725216 - 43725249
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||||||||||| ||||||    
T  43725216 gagaaatgatatttgtacatctactttatgacaa 43725249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 11164313 - 11164261
Alignment:
Q  284 gaagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactctatt 336  Q
    ||||||||  |||||||| | | ||||||||||||||||||||| ||||||||    
T  11164313 gaagttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctatt 11164261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 12962530 - 12962570
Alignment:
Q  294 caaaagttatgtaaaatagttgttcaaatatcactactcta 334  Q
    ||||| |||| | ||||||||||||||||||||||||||||    
T  12962530 caaaatttatatcaaatagttgttcaaatatcactactcta 12962570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 31629601 - 31629637
Alignment:
Q  158 tatgagaaatgatatttgtacatctactttgtgacaa 194  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  31629601 tatgagaaatgatatttgtacaactactttttgacaa 31629637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 7325852 - 7325895
Alignment:
Q  288 ttgtagcaaaagttatgtaaaatagttgttcaaatatcactact 331  Q
    ||||| |||||||||| |||||| ||||||||||||||||||||    
T  7325852 ttgtaccaaaagttatctaaaatggttgttcaaatatcactact 7325895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 1179511 - 1179560
Alignment:
Q  285 aagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactcta 334  Q
    |||||||  |||||||||| | ||||||||||| ||||||||||||||||    
T  1179511 aagttgtcacaaaagttatatcaaatagttgtttaaatatcactactcta 1179560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 6004944 - 6004977
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||| ||||||||||||||    
T  6004944 gagaaatgatatttgtacaactactttgtgacaa 6004977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 7280026 - 7279993
Alignment:
Q  161 gagaaatgatatttgtacatctactttgtgacaa 194  Q
    ||||||||||||||||||||| ||||||||||||    
T  7280026 gagaaatgatatttgtacatccactttgtgacaa 7279993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 21273646 - 21273597
Alignment:
Q  285 aagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactcta 334  Q
    |||||||  |||||||| | | ||||||||||||||||||||||||||||    
T  21273646 aagttgtcacaaaagttgtatgaaatagttgttcaaatatcactactcta 21273597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 24946134 - 24946183
Alignment:
Q  285 aagttgtagcaaaagttatgtaaaatagttgttcaaatatcactactcta 334  Q
    |||||||| |||||||| | |||||| ||||||||||||||||| |||||    
T  24946134 aagttgtaccaaaagttgtctaaaatggttgttcaaatatcactgctcta 24946183  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 9985752 - 9985716
Alignment:
Q  158 tatgagaaatgatatttgtacatctactttgtgacaa 194  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  9985752 tatgagaaatgatatttgtacatctattttatgacaa 9985716  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 16613631 - 16613667
Alignment:
Q  158 tatgagaaatgatatttgtacatctactttgtgacaa 194  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  16613631 tatgagaaatgatatttgaacatctattttgtgacaa 16613667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 20473924 - 20473960
Alignment:
Q  295 aaaagttatgtaaaatagttgttcaaatatcactact 331  Q
    ||||||||| | |||||||||||||||||||||||||    
T  20473924 aaaagttatatgaaatagttgttcaaatatcactact 20473960  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 32174951 - 32174987
Alignment:
Q  158 tatgagaaatgatatttgtacatctactttgtgacaa 194  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  32174951 tatgagaaatgatattcgtacatccactttgtgacaa 32174987  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 440713 - 440751
Alignment:
Q  156 cctatgagaaatgatatttgtacatctactttgtgacaa 194  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  440713 cctatgagaaatgatatttgtacaactactttatgacaa 440751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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