View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19341_high_3 (Length: 467)
Name: NF19341_high_3
Description: NF19341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19341_high_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Original strand, 45450218 - 45450667
Alignment:
| Q |
18 |
aatatcatcatgtttctcattccatcttataacaactgtcacacttacatacnnnnnnnntgtttctaaaaaagagtgtgtcattttcatttttcaacat |
117 |
Q |
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| T |
45450218 |
aatatcatcatgtttctcattccatcttataacaactgtcacacttacatacaaaaaaaatgtttctaaaaaagagtgtgtcattttcatttttcaacat |
45450317 |
T |
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| Q |
118 |
agttttaattgatgtttacaattgtatcttctaattaatattatgttcatcacttccaatcaattattttctactttcatttatttatgataatgaaaat |
217 |
Q |
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| T |
45450318 |
agttttaattgatgtttacaattgtatcttctaattaatattatgttcatcacttccaatcaattattttctactttcatttatttatgataatgaaaat |
45450417 |
T |
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| Q |
218 |
acaccaatgactaataagaatgatttagtgaaatcttcattctatttgcttaaacaatctgaaatggttgttgtgggacggatgaagtatattagtacct |
317 |
Q |
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| T |
45450418 |
acaccaatgactaataagaatgatttagtgaaatcttcattctatttgcttaaacaatctgaaatggttgttgtgggacggatgaagtatattagtacct |
45450517 |
T |
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| Q |
318 |
ctttctcaaagagtttattaaactaaaccatttcagtttaaattggagactaatgttaattgaatgtgtacctctacggccttaaatatgatctgcagct |
417 |
Q |
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| T |
45450518 |
ctttctcaaagagtttattaaactaaaccatttcagtttaaattggagactaatgttaattgaatgtgtacctctacggccttaaatatgatctgcagct |
45450617 |
T |
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| Q |
418 |
gaaatcttaatgtccctatagctgtagcaacataataaagttgtagagga |
467 |
Q |
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| T |
45450618 |
gaaatcttaatgtccctatagctgtagcaacataataaagttgtagagga |
45450667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 95 - 226
Target Start/End: Complemental strand, 32613919 - 32613790
Alignment:
| Q |
95 |
gtgtcattttcatttttcaacatagttttaattga-tgtttacaattgtatcttctaattaatattatgttcatcacttccaatcaattattttctactt |
193 |
Q |
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|||||| ||||| ||||||| ||||||||||||| | ||| |||||||| | ||||| ||||| |||| ||||||| |||| |||||||||||||| |
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| T |
32613919 |
gtgtcactttcaattttcaatgtagttttaattgaatttttccaattgtaccatctaactaatacaatgtgcatcactcccaagttattattttctactt |
32613820 |
T |
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| Q |
194 |
tcatttatttatgataatgaaaatacaccaatg |
226 |
Q |
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| T |
32613819 |
t---tcatttatgataatgaaaatacatcaatg |
32613790 |
T |
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