View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19341_high_5 (Length: 446)
Name: NF19341_high_5
Description: NF19341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19341_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 2377253 - 2377688
Alignment:
| Q |
1 |
aaaacgaactccaatcaaaccttttatcccaaatccctccaaataaactcattaacccttctcaactccaaacttcaatttcatttttgttctcgttaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377253 |
aaaacgaactccaatcaaaccttttatcccaaatccctccaaataaactcattaacccttctcaactccaaacttcaatttcatttttgttctcgttaac |
2377352 |
T |
|
| Q |
101 |
ccttctcaacaccaagcaatgctatgcaaatgcaattgcatccctttcaaagaaccaccaaaacctaaaacaatggaatcaaattcaatccatcataatc |
200 |
Q |
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|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377353 |
ccatctcaacaccaaacaatgctatgcaaatgcaattgcatccctttcaaagaaccaccaaaacctaaaacaatggaatcaaattcaatccatcataatc |
2377452 |
T |
|
| Q |
201 |
acttccagtatctatctactcatttcaacacgctatttttcgtcaccaaactcatccaatacccaccactctctcaacctcaaacttcatctcttcacct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2377453 |
acttccagtatctatctactcatttcaacacgctatttttcgtcaccaaactcatccaatgcccaccactctctcaacctcaaacttcatctcttcacct |
2377552 |
T |
|
| Q |
301 |
tctactcaacacaatccacactccaaacactcgcctcttcaacaaactcatcacatctttccctaatacaacacttcattcttatgccaaaatctgtgaa |
400 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377553 |
tctactcaacacaatccacacttcagacactcgcctcttcaacaaactcatcacatctttccctaatacaacacttcattcttatgccaaaatctgtgaa |
2377652 |
T |
|
| Q |
401 |
attggtgttcaaccagataaacacacgttccctatgct |
438 |
Q |
| |
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|||| ||||||||| ||||||||||||||||| |||| |
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| T |
2377653 |
attgatgttcaacc--ataaacacacgttccctttgct |
2377688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 7e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 129 - 438
Target Start/End: Original strand, 28198317 - 28198621
Alignment:
| Q |
129 |
aatgcaattgcatccctttcaaagaaccaccaaaacctaaaacaatggaatcaaattcaatccatcataatcacttccagtatctatctactcatttcaa |
228 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||| ||| || |||| |||| ||| |
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| T |
28198317 |
aatgcaattgcatccctttcaaagaaccatcaaaacctgaaacaatggaatcaaattcaatccacgatcatcacctccggtctctacacactc----caa |
28198412 |
T |
|
| Q |
229 |
cacgctatttttcgtcaccaaactcatccaatacccaccactctctcaacctcaaacttcatctcttcaccttctactcaacacaatccacactccaaac |
328 |
Q |
| |
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|||| ||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||| |
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| T |
28198413 |
gacgccatttt-cgtcgccaaactcatccaatgcgcaccactctctcaacctcaaacttcatctcttcgccttctcctcaacacaatccacactcccaac |
28198511 |
T |
|
| Q |
329 |
actcgcctcttcaacaaactcatcacatctttccctaatacaacacttcattcttatgccaaaatctgtgaaattggtgttcaaccagataaacacacgt |
428 |
Q |
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||||| ||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
28198512 |
actcgtctcttcaacaaactcataacatctttccctaaaacaacacttctttcttatgccaaaatgcatgaaatgggtgttcaaccagataaacacacgt |
28198611 |
T |
|
| Q |
429 |
tccctatgct |
438 |
Q |
| |
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||||| |||| |
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|
| T |
28198612 |
tccctttgct |
28198621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 13325273 - 13325188
Alignment:
| Q |
7 |
aactccaatcaaaccttttatcccaaatccctccaaataaactcattaacccttctcaactcc-aaacttcaatttcatttttgtt |
91 |
Q |
| |
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||||| |||||||| |||||||| ||||||||| ||||||| |||||||| |||||||||| ||| |||||||||||||||||| |
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| T |
13325273 |
aactctaatcaaactttttatccaaaatccctcaaaataaatccattaaccactctcaactccaaaatttcaatttcatttttgtt |
13325188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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