View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19341_high_7 (Length: 399)
Name: NF19341_high_7
Description: NF19341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19341_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 43 - 375
Target Start/End: Original strand, 12950997 - 12951329
Alignment:
| Q |
43 |
atccaatttaaagaatccaatattggtgttgttgtgttttaggagtggcgattgagcagcaccacagaaaagattgaagaatgaacgcattcttcttagt |
142 |
Q |
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| T |
12950997 |
atccaatttaaaaaatccaatgttggtgttgttgtgttttaggagtggcgatctcaaagcaccaaagaaaagattgaagcatgaacgcattcttcttagt |
12951096 |
T |
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| Q |
143 |
tatacccggactccttcattcttcttagttaatttgtcatcttgcaggctctgggaccctacttcagtaagcttcatgaaaaatgttttaaatggagatc |
242 |
Q |
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| T |
12951097 |
tatacccggactccttcattcttcttagttaatttgtcatcttgcaggctctgggaccctacttcagtaagcttcatgcaaaatgttttaaatggagatc |
12951196 |
T |
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| Q |
243 |
aaagttttctgttggctattactgaaggaagccgggtaattttttagatttatagtgataaattataaaagcatagagacgccatttggtatcgtgtctg |
342 |
Q |
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| T |
12951197 |
aaagttctctgttagctattactgaaggaagccgggtaattttttagatttatagtgataaattataaaagcatagagacgccatttggtattgtgtctg |
12951296 |
T |
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| Q |
343 |
cctgttagaaatcttgtttgacacaacatgtgt |
375 |
Q |
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| T |
12951297 |
cttgttagaaatcttgtttgacacaacatgtgt |
12951329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 155 - 399
Target Start/End: Original strand, 12889558 - 12889806
Alignment:
| Q |
155 |
ccttcattcttcttagttaatttgtcatcttgcaggctctgggaccctacttcagtaagcttcatgaaaaatgttttaaatggagatcaaagttttctgt |
254 |
Q |
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| T |
12889558 |
cctttattcttcttagttaatttgtcatcttgcaggctctgggaccctacttcagtaagctttgtgcaaaatgttgtaaatggagatcgaagttctctgt |
12889657 |
T |
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| Q |
255 |
tggctattactgaaggaagccgggtaattttttagatttatagtgataaattataaaagcatagagacgccatttggtatcgtgtctgcctgttagaaat |
354 |
Q |
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| T |
12889658 |
tagctattactgaaggaagccaggtaattttttagatttatagtgataaattataaaagcatagagacaccatttggtattgtgtctactttttagaaat |
12889757 |
T |
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| Q |
355 |
cttgtttgacacaaca----tgtgtccaacatgtgtgccgtgtcacata |
399 |
Q |
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| T |
12889758 |
cttgttcgacacaacatatgtctgtcctacatgtgtgccgtgtcacata |
12889806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 14402021 - 14401941
Alignment:
| Q |
12 |
atagggtcggatttaccgttgttatacaaagatccaatttaaagaatccaatattggtgttgttgtgttttaggagtggcg |
92 |
Q |
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| T |
14402021 |
atagggccggatttacagttgttatttgatgatccgatataaggaatccaatattggagttgttgtgtgaaaggagtggcg |
14401941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 20909462 - 20909406
Alignment:
| Q |
12 |
atagggtcggatttaccgttgttatacaaagatccaatttaaagaatccaatattgg |
68 |
Q |
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| T |
20909462 |
atagggccggatttacagttgttacagaaagatccagtataaagaatccaatgttgg |
20909406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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