View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19341_high_8 (Length: 390)
Name: NF19341_high_8
Description: NF19341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19341_high_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 12 - 390
Target Start/End: Complemental strand, 48281737 - 48281354
Alignment:
| Q |
12 |
atgaagcaatctatttaaagagcctcggttatctttgtttcgatcgatcaat----tttaagaaagcgg-tgtgaatctgtcgcatcaagaaaatggatc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
48281737 |
atgaagcaatctatttaaagagcctcggttatctttgtttcgatcgatcgatcgattttaagaaagcgggtgtgaatctgtcgcatcaagaaaatggatc |
48281638 |
T |
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| Q |
107 |
aattcaaaggacaacctcgtctccccaaattcgctgttccaaagcgttacgacattcgactcaaaccagacctcaacgaatgtcgtttttccggttctgt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48281637 |
aattcaaaggacaacctcgtctccccaaattcgctgttccaaagcgttacgacattcgactcaaaccagacctcaacgaatgtcgtttttccggttctgt |
48281538 |
T |
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| Q |
207 |
ctccgttaaccttaacatcgtcaccgctaccaatttcatagttctcaatgccgctgaactcactgtctctgacgacgccgtttctttcatcaatcgcgat |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
48281537 |
ctccgttaaccttaacatcgtcaccgctaccaatttcatagttctcaatgccgctgaactcactgtctctgacgacgccgtttctttcaccaatcgcgat |
48281438 |
T |
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| Q |
307 |
tcctcaaaggtactacctgtgttttttgttaccatgtttctttctgatttatttataatcgatgaatgtttctgtaggttttta |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48281437 |
tcctcaaaggtactacctgtgttttttgttaccatgtttctttctgatttatttataatcgatgaatgtttctgtaggttttta |
48281354 |
T |
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