View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19342_high_13 (Length: 256)

Name: NF19342_high_13
Description: NF19342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19342_high_13
NF19342_high_13
[»] chr2 (4 HSPs)
chr2 (17-157)||(5522372-5522512)
chr2 (99-171)||(11129525-11129599)
chr2 (116-157)||(28694506-28694547)
chr2 (113-171)||(21425057-21425117)
[»] chr1 (3 HSPs)
chr1 (99-153)||(42474274-42474328)
chr1 (100-171)||(9001592-9001665)
chr1 (100-169)||(21937919-21937990)
[»] scaffold0088 (1 HSPs)
scaffold0088 (103-157)||(47002-47056)
[»] chr4 (4 HSPs)
chr4 (104-171)||(27918517-27918586)
chr4 (104-157)||(42170570-42170623)
chr4 (103-171)||(11314451-11314521)
chr4 (113-153)||(55901899-55901939)
[»] chr3 (3 HSPs)
chr3 (92-157)||(1214897-1214961)
chr3 (116-151)||(23567781-23567816)
chr3 (121-157)||(10841629-10841665)
[»] chr8 (3 HSPs)
chr8 (120-171)||(5374514-5374567)
chr8 (117-157)||(23052148-23052188)
chr8 (103-143)||(33822159-33822199)
[»] chr6 (1 HSPs)
chr6 (116-154)||(35030820-35030858)
[»] chr5 (2 HSPs)
chr5 (116-153)||(13280851-13280888)
chr5 (92-157)||(41954708-41954772)


Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 5522512 - 5522372
Alignment:
Q  17 catataatcacttaagaggtaaattgtagtagtttacgaaatcttttttaccatttgcttttgttaaatactagctccgtaccaaattatacgtcgttct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||    
T  5522512 catataatcacttaagaggtaaattgtagtagtttacgaaatcttttttaccatttgcttttgttaaatactatctccgtaccaaattatacgttattct 5522413  T
Q  117 agcaaaatttatttgttctaaattatatgtcattttacaat 157  Q
    || ||||||| ||||||||||||||||||||||||||||||    
T  5522412 agtaaaatttgtttgttctaaattatatgtcattttacaat 5522372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 11129525 - 11129599
Alignment:
Q  99 caaattatacgtcgttctagcaaaatttatttgttctaaattatatgtcattttaca--atcaatgaatcattaa 171  Q
    ||||||||| ||| ||||| |||||||| ||||||||||||||||||||| ||||||  ||||| ||||||||||    
T  11129525 caaattatatgtcattctaacaaaatttgtttgttctaaattatatgtcactttacaatatcaaggaatcattaa 11129599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 28694547 - 28694506
Alignment:
Q  116 tagcaaaatttatttgttctaaattatatgtcattttacaat 157  Q
    ||||||||||||||||||| |||||| |||||||||||||||    
T  28694547 tagcaaaatttatttgttccaaattacatgtcattttacaat 28694506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 21425057 - 21425117
Alignment:
Q  113 ttctagcaaaatttatttgttctaaattatatgtcattttacaa--tcaatgaatcattaa 171  Q
    |||||||||||||| ||||||| |||||||| |||| |||||||  |||| ||||||||||    
T  21425057 ttctagcaaaatttgtttgttccaaattatacgtcactttacaatgtcaaagaatcattaa 21425117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 42474328 - 42474274
Alignment:
Q  99 caaattatacgtcgttctagcaaaatttatttgttctaaattatatgtcatttta 153  Q
    ||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||    
T  42474328 caaattatacgtctttctaacaagatttatttgttctaaattatatgtcatttta 42474274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 9001592 - 9001665
Alignment:
Q  100 aaattatacgtcgttctagcaaaatttatttgttctaaattatatgtcattttaca--atcaatgaatcattaa 171  Q
    |||||||| ||| || || |||||||| |||||| |||||||||||||| ||||||  ||||||||||||||||    
T  9001592 aaattatatgtcattttaacaaaatttgtttgttttaaattatatgtcactttacaatatcaatgaatcattaa 9001665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 21937919 - 21937990
Alignment:
Q  100 aaattatacgtcgttctagcaaaatttatttgttctaaattatatgtcattttaca--atcaatgaatcatt 169  Q
    |||||||| ||| ||||| |||||||||||||    |||||||||||||||||| |  ||||||||||||||    
T  21937919 aaattatatgtcattctaacaaaatttatttgcctcaaattatatgtcattttataatatcaatgaatcatt 21937990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 47056 - 47002
Alignment:
Q  103 ttatacgtcgttctagcaaaatttatttgttctaaattatatgtcattttacaat 157  Q
    ||||| ||| |||||||||||||||||||||  ||||||||||||| ||||||||    
T  47056 ttatatgtcattctagcaaaatttatttgtttcaaattatatgtcactttacaat 47002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 27918586 - 27918517
Alignment:
Q  104 tatacgtcgttctagcaaaatttatttgttctaaattatatgtcattttaca--atcaatgaatcattaa 171  Q
    |||| ||| |||||||||||||| ||| ||  ||||||||||||||||||||  ||||||||||||||||    
T  27918586 tatatgtcattctagcaaaatttgtttctttcaaattatatgtcattttacaatatcaatgaatcattaa 27918517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 42170570 - 42170623
Alignment:
Q  104 tatacgtcgttctagcaaaatttatttgttctaaattatatgtcattttacaat 157  Q
    |||| ||| |||||||||||| ||||||||| || |||||||||||||||||||    
T  42170570 tatatgtcattctagcaaaatctatttgttccaagttatatgtcattttacaat 42170623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 11314521 - 11314451
Alignment:
Q  103 ttatacgtcgttctagcaaaatttatttgttctaaattatatgtcattttaca--atcaatgaatcattaa 171  Q
    ||||| ||| ||||| |||||||||||||||  ||||||||| ||||||||||  ||||| ||||||||||    
T  11314521 ttatatgtcattctaccaaaatttatttgtttcaaattatatatcattttacaatatcaaagaatcattaa 11314451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 55901899 - 55901939
Alignment:
Q  113 ttctagcaaaatttatttgttctaaattatatgtcatttta 153  Q
    |||||||||||| | ||||||||||||||||||| ||||||    
T  55901899 ttctagcaaaatctgtttgttctaaattatatgttatttta 55901939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 1214961 - 1214897
Alignment:
Q  92 tccgtaccaaattatacgtcgttctagcaaaatttatttgttctaaattatatgtcattttacaat 157  Q
    ||||| |||||||||| ||| ||||| ||||||| |||||||| ||||||||||||| ||||||||    
T  1214961 tccgttccaaattatatgtcattctaccaaaattcatttgttc-aaattatatgtcactttacaat 1214897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 23567781 - 23567816
Alignment:
Q  116 tagcaaaatttatttgttctaaattatatgtcattt 151  Q
    ||||||||||| ||||||||||||||||||||||||    
T  23567781 tagcaaaatttgtttgttctaaattatatgtcattt 23567816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 10841665 - 10841629
Alignment:
Q  121 aaatttatttgttctaaattatatgtcattttacaat 157  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  10841665 aaatttatttgttttaaattatatgtcattttgcaat 10841629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 5374514 - 5374567
Alignment:
Q  120 aaaatttatttgttctaaattatatgtcattttaca--atcaatgaatcattaa 171  Q
    ||||||| ||||||| ||||||||||||||||||||  |||| |||||||||||    
T  5374514 aaaatttgtttgttccaaattatatgtcattttacaatatcattgaatcattaa 5374567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 23052148 - 23052188
Alignment:
Q  117 agcaaaatttatttgttctaaattatatgtcattttacaat 157  Q
    |||||||||| |||||| |||||||||||||| ||||||||    
T  23052148 agcaaaatttgtttgttttaaattatatgtcactttacaat 23052188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 33822159 - 33822199
Alignment:
Q  103 ttatacgtcgttctagcaaaatttatttgttctaaattata 143  Q
    ||||| ||| |||||||||||||||||||||| ||||||||    
T  33822159 ttatatgtcattctagcaaaatttatttgttccaaattata 33822199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 35030820 - 35030858
Alignment:
Q  116 tagcaaaatttatttgttctaaattatatgtcattttac 154  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  35030820 tagcaaaatttatttgttcagaattatatgtcattttac 35030858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 13280888 - 13280851
Alignment:
Q  116 tagcaaaatttatttgttctaaattatatgtcatttta 153  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  13280888 tagcaaaatttattcgttctaaattacatgtcatttta 13280851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 41954772 - 41954708
Alignment:
Q  92 tccgtaccaaattatacgtcgttctagcaaaatttatttgttctaaattatatgtcattttacaat 157  Q
    ||||| |||||||||| ||| ||||| ||||||| |||||| | ||||||||||||| ||||||||    
T  41954772 tccgttccaaattatatgtcattctaccaaaattcatttgtcc-aaattatatgtcactttacaat 41954708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University