View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19342_high_7 (Length: 378)
Name: NF19342_high_7
Description: NF19342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19342_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 2386067 - 2385698
Alignment:
| Q |
1 |
tggatattgttggaagtcttaaacatgagaatgtggttgagctaaaggcatattactattccaaagatgagaaactggttgtgtatgactatttcagtca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2386067 |
tggatattgttggaagtcttaaacatgagaatgtggttgagctaaaggcatattactattccaaagatgagaaactggttgtgtatgactatttcagtca |
2385968 |
T |
|
| Q |
101 |
gggtagcatctctgctttgttgcatggtatgaggcataaatttgattttgtttttccttt-caactgctcttaaaattattattgatactcgattgttaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
2385967 |
gggtagcatctctgctttgttgcatggtatgaggcataaatttgaatttgtttttccttttcaactgctcttaaaattattattgatactcaattgttaa |
2385868 |
T |
|
| Q |
200 |
aaatctttcgtttattttttgttcatcgacgtcgtttgttgcttcttgaccttgactgtatcatcagatatgagtaaattgagtagatagtataaaatta |
299 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2385867 |
aaatctttcgtttattttttgtgcattgacgtcgtttgttgcttcttgaccttgactgtatcatcagatatgagtaaattgagtagatagtataaaatta |
2385768 |
T |
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| Q |
300 |
ggatttttgaatttagttgttaggctatcttgcaagttcctatgcgaaaaatatcttttgtttctctctg |
369 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2385767 |
ggattttggaatttagttgttaggctatcttgcaagttcctatgcgaaaaatatcttttgtttctctctg |
2385698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 41730002 - 41730132
Alignment:
| Q |
1 |
tggatattgttggaagtcttaaacatgagaatgtggttgagctaaaggcatattactattccaaagatgagaaactggttgtgtatgactatttcagtca |
100 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | || ||||| || | ||| | |
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| T |
41730002 |
tggagattgttggaagtcttaaacatgagaatgtagttgagctcaaggcatattactattccaaagatgagaaacttatggtatatgattactacagccg |
41730101 |
T |
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| Q |
101 |
gggtagcatctctgctttgttgcatggtatg |
131 |
Q |
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|| ||| ||||| ||||||||||||||||| |
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| T |
41730102 |
agggagcgtctcttctttgttgcatggtatg |
41730132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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