View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19342_high_8 (Length: 345)

Name: NF19342_high_8
Description: NF19342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19342_high_8
NF19342_high_8
[»] chr5 (3 HSPs)
chr5 (12-314)||(20534639-20534941)
chr5 (45-306)||(21941300-21941563)
chr5 (66-208)||(11848059-11848203)
[»] chr2 (4 HSPs)
chr2 (12-306)||(14294769-14295065)
chr2 (140-308)||(31484250-31484418)
chr2 (140-306)||(27546825-27546990)
chr2 (140-225)||(10927198-10927283)
[»] chr4 (4 HSPs)
chr4 (46-263)||(4216080-4216299)
chr4 (162-298)||(21883139-21883276)
chr4 (46-232)||(3796987-3797175)
chr4 (126-306)||(31180346-31180526)
[»] chr1 (4 HSPs)
chr1 (116-308)||(21545093-21545287)
chr1 (142-308)||(25368659-25368826)
chr1 (118-183)||(7330154-7330219)
chr1 (239-308)||(19030462-19030531)
[»] chr6 (2 HSPs)
chr6 (12-311)||(26547712-26548016)
chr6 (144-311)||(9367873-9368040)
[»] chr7 (2 HSPs)
chr7 (116-309)||(42574736-42574929)
chr7 (47-182)||(24578628-24578765)
[»] chr3 (2 HSPs)
chr3 (140-254)||(45295043-45295157)
chr3 (145-200)||(13423519-13423574)
[»] chr8 (3 HSPs)
chr8 (140-208)||(26674268-26674336)
chr8 (177-298)||(12847581-12847702)
chr8 (164-205)||(31534667-31534708)
[»] scaffold0008 (1 HSPs)
scaffold0008 (141-186)||(259902-259947)


Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 20534941 - 20534639
Alignment:
Q  12 atcatcatctcctattatctcataacccggcgctcgacttagttcactataggctcatcctaccgacatatctttcttcccatttatttgcatcttcaag 111  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  20534941 atcatcatctcctattacctcataacccggcgctcgacttagttcattataggctcatcctaccgacatatatttcttccaatttatttgcatcttcaag 20534842  T
Q  112 acattgttgtcttcatatcacgaaatttggaggaattggacaaccatccctcaaatataccatcataaaatgattgatattcacgtgtgctagacacttc 211  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20534841 acattgttgtcttcatagcacgaaatttggaggaattggacaaccatccctcaaatataccatcataaaatgattgatattcacgtgtgctagacacttc 20534742  T
Q  212 attccgtctttatgcgaaggttcactgcgtagagggaaaaaagttttcgattgcactttctcgatggacagtagaaccaccacatgcatgtatctctatg 311  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20534741 attcggtctttatgcgaaggttcactgcgtagagggaaaaaggttttcgattgcactttcttgatggacagtagaaccaccacatgcatgtatctctatg 20534642  T
Q  312 gaa 314  Q
    |||    
T  20534641 gaa 20534639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 45 - 306
Target Start/End: Complemental strand, 21941563 - 21941300
Alignment:
Q  45 tcgacttagttcactataggc--tcatcctaccgacatatctttcttcccatttatttgcatcttcaagacattgttgtcttcatatcacgaaatttgga 142  Q
    ||||||||||||| ||||||   ||||||||| |  ||||||||| ||| |||| |||||||||||| || | |||||||| |||| |||| || |  ||    
T  21941563 tcgacttagttcattataggtaatcatcctacggggatatctttcatccgatttctttgcatcttcacgaaaatgttgtctccatagcacggaagtcaga 21941464  T
Q  143 ggaattggacaaccatccctcaaatataccatcataaaatgattgatattcacgtgtgctagacacttcattccgtctttatgcgaaggttcactgcgta 242  Q
    |||||||||||||||| | ||||||||||||||||||||| |||   |||||| |||| ||||||  ||||||  | |  |||| ||||| ||| | |||    
T  21941463 ggaattggacaaccattcttcaaatataccatcataaaataattttcattcacatgtgttagacaaatcattcgttgtcaatgcaaaggtgcaccgagta 21941364  T
Q  243 gagggaaaaaagttttcgattgcactttctcgatggacagtagaaccaccacatgcatgtatct 306  Q
    |||||||||||||||  |||||| |||| | ||||||||||||||||||||||||| |||||||    
T  21941363 gagggaaaaaagtttctgattgccctttattgatggacagtagaaccaccacatgcttgtatct 21941300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 11848059 - 11848203
Alignment:
Q  66 tcatcctaccgacata--tctttcttcccatttatttgcatcttcaagacattgttgtcttcatatcacgaaatttggaggaattggacaaccatccctc 163  Q
    ||||||||| ||||||  |||||| |||||||| |||||||||||  ||||  ||||||| |||| || | || | ||||||||||||||||||||| ||    
T  11848059 tcatcctacggacataaatctttcatcccatttttttgcatcttctcgacaaagttgtctccatagcatggaaataggaggaattggacaaccatccttc 11848158  T
Q  164 aaatataccatcataaaatgattgatattcacgtgtgctagacac 208  Q
    ||||| ||||| |||||||| |||  |||||| ||| ||||||||    
T  11848159 aaataaaccataataaaatggttgtcattcacatgttctagacac 11848203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 306
Target Start/End: Complemental strand, 14295065 - 14294769
Alignment:
Q  12 atcatcatctcctattatctcataacccggcgctcgacttagttcactataggc--tcatcctaccgacatatctttcttcccatttatttgcatcttca 109  Q
    ||||||||||| ||||| |||||||| || ||   |||||||| || ||| |||  |||| ||||||||||||||||| |||||||| ||||||| |||     
T  14295065 atcatcatctcatattacctcataacacgccgacagacttagtccattattggcaatcattctaccgacatatctttcatcccatttttttgcatattct 14294966  T
Q  110 agacattgttgtcttcatatcacgaaatttggaggaattggacaaccatccctcaaatataccatcataaaatgattgatattcacgtgtgctagacact 209  Q
     |||| |||||||| |||| |||  || | | |||||||||| |||||||| ||||||||| |||||||||||| ||| ||||||| |||||| |||||     
T  14294965 cgacaatgttgtctccatagcacagaagtggaaggaattggataaccatccttcaaatatatcatcataaaatggttgttattcacatgtgcttgacaca 14294866  T
Q  210 tcattccgtctttatgcgaaggttcactgcgtagagggaaaaaagttttcgattgcactttctcgatggacagtagaaccaccacatgcatgtatct 306  Q
     |||||  ||| |||| ||||||||||  |||||||||||||| |||||| ||||| ||||||||||||||| |||||||||||||||| |||||||    
T  14294865 acattcaatctctatgtgaaggttcaccacgtagagggaaaaaggttttcaattgccctttctcgatggacaatagaaccaccacatgcttgtatct 14294769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 140 - 308
Target Start/End: Complemental strand, 31484418 - 31484250
Alignment:
Q  140 ggaggaattggacaaccatccctcaaatataccatcataaaatgattgatattcacgtgtgctagacacttcattccgtctttatgcgaaggttcactgc 239  Q
    |||||||||||||||||| || |||||||||  ||||||||||| |||  |||||| ||||  |  ||| |||||| |||| |||| || ||| |||  |    
T  31484418 ggaggaattggacaaccaaccttcaaatatataatcataaaatggttgtcattcacatgtgtcatgcacatcattcagtctctatgtgatggtgcaccac 31484319  T
Q  240 gtagagggaaaaaagttttcgattgcactttctcgatggacagtagaaccaccacatgcatgtatctct 308  Q
     |||||||||||| ||||||||| || ||||||| ||||| |||| ||| ||||||||  |||||||||    
T  31484318 atagagggaaaaaggttttcgatcgccctttctcaatggatagtataacaaccacatgtttgtatctct 31484250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 306
Target Start/End: Complemental strand, 27546990 - 27546825
Alignment:
Q  140 ggaggaattggacaaccatccctcaaatataccatcataaaatgattgatattcacgtgtgctagacacttcattccgtctttatgcgaaggttcactgc 239  Q
    ||||||||||||||||||| | ||||||| |||||||||||||| |||  |||||| || | ||||||| ||||||  | | |||||||  || ||| ||    
T  27546990 ggaggaattggacaaccattcttcaaatacaccatcataaaatggttgtcattcacatgagttagacacatcattcgatttctatgcgattgtgcaccgc 27546891  T
Q  240 gtagagggaaaaaagttttcgattgcactttctcgatggacagtagaaccaccacatgcatgtatct 306  Q
     |||  |||||||  |||||||| || ||||| |||||||||| ||||| ||||||||  |||||||    
T  27546890 atag-tggaaaaatattttcgatcgctctttcacgatggacagcagaacaaccacatgtttgtatct 27546825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 10927283 - 10927198
Alignment:
Q  140 ggaggaattggacaaccatccctcaaatataccatcataaaatgattgatattcacgtgtgctagacacttcattccgtctttatg 225  Q
    ||||||||| ||||||||||| |||||||||  ||||||||||| ||   |||||| |||| ||||||| ||| || |||| ||||    
T  10927283 ggaggaatttgacaaccatccttcaaatatattatcataaaatggttttcattcacatgtgttagacacatcaatcagtctctatg 10927198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 46 - 263
Target Start/End: Complemental strand, 4216299 - 4216080
Alignment:
Q  46 cgacttagttcactataggc--tcatcctaccgacatatctttcttcccatttatttgcatcttcaagacattgttgtcttcatatcacgaaatttggag 143  Q
    |||||||||||| |||||||  |||| ||| ||||||||||||| ||||||   |||||||||||  |||  |||||| | |||| |||| || | ||||    
T  4216299 cgacttagttcattataggcaatcattctatcgacatatctttcatcccatgactttgcatcttcttgacgatgttgtttccatagcacggaagtgggag 4216200  T
Q  144 gaattggacaaccatccctcaaatataccatcataaaatgattgatattcacgtgtgctagacacttcattccgtctttatgcgaaggttcactgcgtag 243  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||   |||||| |||||||||||| | |||| |||| ||||||||||||| |  |||||    
T  4216199 gaattggacaatcatccgtcaaatataccatcataaaatggttatcattcacatgtgctagacacattattcggtctctatgcgaaggttcgccacgtag 4216100  T
Q  244 agggaaaaaagttttcgatt 263  Q
    ||||||||| ||||| ||||    
T  4216099 agggaaaaaggtttttgatt 4216080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 162 - 298
Target Start/End: Original strand, 21883139 - 21883276
Alignment:
Q  162 tcaaatataccatcataaaatgattgatattcacgtgtgctagacacttcattccgtctt-tatgcgaaggttcactgcgtagagggaaaaaagttttcg 260  Q
    |||||||||| ||||||| ||| |||  |||||| |||||||||||| |||||| || || |||| |||||| ||||||||| ||||||||| |||||||    
T  21883139 tcaaatatactatcataatatggttgtcattcacatgtgctagacacatcattcggttttctatgtgaaggtgcactgcgtaaagggaaaaaggttttcg 21883238  T
Q  261 attgcactttctcgatggacagtagaaccaccacatgc 298  Q
    ||||| |||| |||||||| ||||||||||| ||||||    
T  21883239 attgccctttatcgatggatagtagaaccacaacatgc 21883276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 46 - 232
Target Start/End: Complemental strand, 3797175 - 3796987
Alignment:
Q  46 cgacttagttcactataggc--tcatcctaccgacatatctttcttcccatttatttgcatcttcaagacattgttgtcttcatatcacgaaatttggag 143  Q
    |||||||||||| ||||| |  |||| ||| ||||||||||||| ||||||   |||||||||||  |||  |||||| | |||| || | || | ||||    
T  3797175 cgacttagttcattatagacaatcattctatcgacatatctttcatcccatgactttgcatcttcttgacgatgttgtttccatagcagggaagtgggag 3797076  T
Q  144 gaattggacaaccatccctcaaatataccatcataaaatgattgatattcacgtgtgctagacacttcattccgtctttatgcgaaggt 232  Q
    ||||||||||| ||||| ||| |||||||||||||||||| ||   |||||| |||||||||||| | |||| |||| |||||||||||    
T  3797075 gaattggacaatcatccgtcatatataccatcataaaatggttaccattcacatgtgctagacacattattcggtctctatgcgaaggt 3796987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 306
Target Start/End: Complemental strand, 31180526 - 31180346
Alignment:
Q  126 atatcacgaaatttggaggaattggacaaccatccctcaaatataccatcataaaatgattgatattcacgtgtgctagacacttcattccgtctttatg 225  Q
    |||| |||||| | |||||||||  |||||||||| || |||||||||| |||||||| ||   |||||| || ||||||||| |||||| || | ||||    
T  31180526 atataacgaaagtgggaggaattatacaaccatccttctaatataccataataaaatggttatcattcacatgcgctagacacatcattcggtatatatg 31180427  T
Q  226 cgaaggttcactgcgtagagggaaaaaagttttcgattgcactttctcgatggacagtagaaccaccacatgcatgtatct 306  Q
    | ||||| |||  | || ||||||||| ||||   ||||| |||| | ||| ||||||||||| |||| |||| |||||||    
T  31180426 caaaggtgcaccacataaagggaaaaaggtttctaattgccctttattgatcgacagtagaactaccatatgcttgtatct 31180346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 116 - 308
Target Start/End: Complemental strand, 21545287 - 21545093
Alignment:
Q  116 tgttgtcttcatatcacgaaatttggaggaattggacaaccatccctcaaatataccatcataaaatgatt--gatattcacgtgtgctagacacttcat 213  Q
    |||||||| |||| |||| || | ||||||| ||||||||||||| ||||||||| |||||||||||| ||  |  |||||| |||||||||||| ||||    
T  21545287 tgttgtctccatagcacggaagtgggaggaaatggacaaccatccatcaaatatatcatcataaaatggttttgtcattcacatgtgctagacacatcat 21545188  T
Q  214 tccgtctttatgcgaaggttcactgcgtagagggaaaaaagttttcgattgcactttctcgatggacagtagaaccaccacatgcatgtatctct 308  Q
    || |||| |||| |||| | ||| |||||||||||||||  |||| |||||   ||| |||||||||| ||||||||| |||||  |||||||||    
T  21545187 tcggtctctatgggaagatgcaccgcgtagagggaaaaagatttttgattgtcgtttatcgatggacattagaaccactacatgtttgtatctct 21545093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 142 - 308
Target Start/End: Original strand, 25368659 - 25368826
Alignment:
Q  142 aggaattggacaaccatccctcaaatataccatcataaaatgattgatattcacgtgtgctagacacttcattccgtctttatgcgaaggttcactgcgt 241  Q
    ||||||||||||| ||| | |||||||||||| ||| ||||  |||  || ||| |||||||||||  ||||||  | | |||||||||||||||| |||    
T  25368659 aggaattggacaatcattcttcaaatataccaccatcaaatagttgtcatccacatgtgctagacatatcattcaatttctatgcgaaggttcactacgt 25368758  T
Q  242 agagggaaaaaa-gttttcgattgcactttctcgatggacagtagaaccaccacatgcatgtatctct 308  Q
    | ||||||||||  |||| |||||| |||| | |||| |||||||||||||||||||| | |||||||    
T  25368759 aaagggaaaaaatatttttgattgctctttattgatgtacagtagaaccaccacatgcttatatctct 25368826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 7330219 - 7330154
Alignment:
Q  118 ttgtcttcatatcacgaaatttggaggaattggacaaccatccctcaaatataccatcataaaatg 183  Q
    |||||| |||| |||| || ||||||||||||||||||||| | ||||||||| ||||||||||||    
T  7330219 ttgtctccatagcacggaagttggaggaattggacaaccattcttcaaatatatcatcataaaatg 7330154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 308
Target Start/End: Complemental strand, 19030531 - 19030462
Alignment:
Q  239 cgtagagggaaaaaagttttcgattgcactttctcgatggacagtagaaccaccacatgcatgtatctct 308  Q
    |||||||||||||||||||| |||||| |||| | |||||||| |||||| ||| ||||| |||||||||    
T  19030531 cgtagagggaaaaaagtttttgattgctctttattgatggacaatagaactacctcatgcttgtatctct 19030462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 311
Target Start/End: Complemental strand, 26548016 - 26547712
Alignment:
Q  12 atcatcatctcctattatctcataacccggcgctcgacttagttc-----actataggc--tcatcctaccgacatatctttcttcccatttatttgcat 104  Q
    ||||||||||||||||| ||||||||||| || | ||||||||||     | |||||||  |||||||||  |||||| |||| | || | | ||| |||    
T  26548016 atcatcatctcctattacctcataacccgtcgtttgacttagttcattatattataggcaatcatcctacatacatatatttccttccgtattttttcat 26547917  T
Q  105 cttcaagacattgttgtcttcatatcacgaaatttggaggaattggacaaccatccctcaaatataccatcataaaatgattgatattcacgtgtgctag 204  Q
    ||||  |||| | |||||| |||   ||| || | | |||||||   ||||| ||| |||||||||||||||| ||||| |||  |||||| |||| |||    
T  26547916 cttctcgacaattttgtctccatggtacggaaatagaaggaatttatcaaccgtccttcaaatataccatcatgaaatggttgtcattcacatgtgttag 26547817  T
Q  205 acacttcattccgtctttatgcgaaggttcactgcgtagagggaaaaaagttttcgattgcactttctcgatggacagtagaaccaccacatgcatgtat 304  Q
    |||| |||||| |||| |||| |||||| ||| | |||||||  |||| |||| | ||||| |||  ||||||||||||| ||||||||||||  |||||    
T  26547816 acacatcattcggtctctatgtgaaggtgcaccgtgtagagg--aaaaggtttcccattgcccttgttcgatggacagtaaaaccaccacatgattgtat 26547719  T
Q  305 ctctatg 311  Q
    || ||||    
T  26547718 ctttatg 26547712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 311
Target Start/End: Original strand, 9367873 - 9368040
Alignment:
Q  144 gaattggacaaccatccctcaaatataccatcataaaatgattgatattcacgtgtgctagacacttcattccgtctttatgcgaaggttcactgcgtag 243  Q
    |||| |||||||||||| ||| |||||| |||||||||||||||  |||||| ||| | |||||| |||||  || |  |||| ||||| ||||  |||     
T  9367873 gaatgggacaaccatccttcagatatacgatcataaaatgattgtcattcacatgtacaagacacatcatttggtttcaatgcaaaggtacactatgtaa 9367972  T
Q  244 agggaaaaaagttttcgattgcactttctcgatggacagtagaaccaccacatgcatgtatctctatg 311  Q
     |||||| | ||||  | |||| ||||   |||||| |||||||||||||||| | | ||||||||||    
T  9367973 tgggaaagaggtttcgggttgcccttttatgatggaaagtagaaccaccacattcttatatctctatg 9368040  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 116 - 309
Target Start/End: Complemental strand, 42574929 - 42574736
Alignment:
Q  116 tgttgtcttcatatcacgaaatttggaggaattggacaaccatccctcaaatataccatcataaaatgattgatattcacgtgtgctagacacttcattc 215  Q
    |||||||| ||||| ||| || | ||||||||||||||  ||||| | | |||||||||||||||||| |||  | ||||||  |||| |||| ||||||    
T  42574929 tgttgtctgcatataacggaagtgggaggaattggacagtcatcctttagatataccatcataaaatggttgtcactcacgtaagctacacacgtcattc 42574830  T
Q  216 cgtctttatgcgaaggttcactgcgtagagggaaaaaagttttcgattgcactttctcgatggacagtagaaccaccacatgcatgtatctcta 309  Q
      | | |||| || ||| ||| || | |||||||||| |||||||||  | | ||||||||||||||| |||| |||| |||  ||||||||||    
T  42574829 aatttatatgtgatggtgcaccgcatcgagggaaaaaggttttcgatcaccccttctcgatggacagtcgaacaaccatatgtttgtatctcta 42574736  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 182
Target Start/End: Original strand, 24578628 - 24578765
Alignment:
Q  47 gacttagttcactataggc--tcatcctaccgacatatctttcttcccatttatttgcatcttcaagacattgttgtcttcatatcacgaaatttggagg 144  Q
    ||||||||||| |||||||  |||||||||||||||||| |||  |||| || |||||||||||    || ||  |||| |||| || |||||| |||||    
T  24578628 gacttagttcattataggcaatcatcctaccgacatatcattcaccccaattttttgcatcttctctccaatgaagtctccatagcatgaaattgggagg 24578727  T
Q  145 aattggacaaccatccctcaaatataccatcataaaat 182  Q
    |||||||||| ||||  ||| |||||| ||||||||||    
T  24578728 aattggacaatcatcattcatatatacaatcataaaat 24578765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 254
Target Start/End: Original strand, 45295043 - 45295157
Alignment:
Q  140 ggaggaattggacaaccatccctcaaatataccatcataaaatgattgatattcacgtgtgctagacacttcattccgtctttatgcgaaggttcactgc 239  Q
    ||||||||| |||||| |||  ||||||||| | |||| ||||| |||  |||||| | | |||||||| ||||||  ||| ||||||||||| |||  |    
T  45295043 ggaggaatttgacaacaatcattcaaatatatcttcatcaaatggttgtcattcacatatcctagacacatcattcaatctatatgcgaaggtgcaccac 45295142  T
Q  240 gtagagggaaaaaag 254  Q
    |||||||||||||||    
T  45295143 gtagagggaaaaaag 45295157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 13423519 - 13423574
Alignment:
Q  145 aattggacaaccatccctcaaatataccatcataaaatgattgatattcacgtgtg 200  Q
    ||||||||||| |||| |||||||||||||||||||||| |||  |||||| ||||    
T  13423519 aattggacaactatccttcaaatataccatcataaaatggttgtgattcacatgtg 13423574  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 26674268 - 26674336
Alignment:
Q  140 ggaggaattggacaaccatccctcaaatataccatcataaaatgattgatattcacgtgtgctagacac 208  Q
    ||||||||||||||||||||| | |||||||  ||||||||||| |||  |||||| ||||| ||||||    
T  26674268 ggaggaattggacaaccatcctttaaatatattatcataaaatggttgtcattcacatgtgccagacac 26674336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 298
Target Start/End: Complemental strand, 12847702 - 12847581
Alignment:
Q  177 taaaatgattgatattcacgtgtgctagacacttcattccgtctttatgcgaaggttcactgcgtagagggaaaaaagttttcgattgcactttctcgat 276  Q
    |||||||||||  || ||| ||||||||||||  ||||| || | || || ||||| |||||| || | ||||||| |||||||||||  |||| |  ||    
T  12847702 taaaatgattgtcatacacatgtgctagacacaccattcagtttctaagcaaaggtacactgcataaaaggaaaaaggttttcgattgtcctttttttat 12847603  T
Q  277 ggacagtagaaccaccacatgc 298  Q
     ||||||||||| |||||||||    
T  12847602 agacagtagaactaccacatgc 12847581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 31534708 - 31534667
Alignment:
Q  164 aaatataccatcataaaatgattgatattcacgtgtgctaga 205  Q
    |||||||||||||||||||| |||| |||||| |||||||||    
T  31534708 aaatataccatcataaaatggttgacattcacatgtgctaga 31534667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 259902 - 259947
Alignment:
Q  141 gaggaattggacaaccatccctcaaatataccatcataaaatgatt 186  Q
    ||||||||||||||| |||| ||||||||| ||||| |||||||||    
T  259902 gaggaattggacaactatccttcaaatatatcatcaaaaaatgatt 259947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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