View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19342_low_11 (Length: 291)
Name: NF19342_low_11
Description: NF19342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19342_low_11 |
 | |
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| [»] scaffold0295 (1 HSPs) |
| | |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 51457869 - 51457596
Alignment:
| Q |
1 |
caaataattaagagattctggaaaaacatgccagaaatataaaaaggttttgaagcatactgcatcagacacatcacaatggagcttagtcacagaatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51457869 |
caaataattaagagattctggaaaaacatgccagaaatataaaaaggttttgaagcatactgcatcagacacatcacaatggagcttagtcacagaatca |
51457770 |
T |
|
| Q |
101 |
ccacgtccgagattctgagcaaatccataagcaatatatgttcttggccccatgtcaggctttacacaataatccggcaacttcacagcaaggttgagag |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51457769 |
ccgcgtccgagattctgagcaaatccataagcaatatatgttcttggccccatgtcaggctttacacaataatccggcaacttcacagcaaggttgagag |
51457670 |
T |
|
| Q |
201 |
aaccactaaaaggatttgtgtattctttataaggcaaggaagatatgaactcagcatgatgacgaggtaaaagt |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51457669 |
aaccactaaaaggatttgtgtattctttataaggcaaggaagatatgaactcagcatgatgacgaggtaaaagt |
51457596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 50 - 267
Target Start/End: Complemental strand, 51482464 - 51482247
Alignment:
| Q |
50 |
ttgaagcatactgcatcagacacatcacaatggagcttagtcacagaatcaccacgtccgagattctgagcaaatccataagcaatatatgttcttggcc |
149 |
Q |
| |
|
||||| |||||||||||||||| || ||| ||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||| |||| | |
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|
| T |
51482464 |
ttgaatcatactgcatcagacatattacagtggagcttagtcacagaatcaccacgtccaagctcctgagcaaatccataagcaatatatgtttttgggc |
51482365 |
T |
|
| Q |
150 |
ccatgtcaggctttacacaataatccggcaacttcacagcaaggttgagagaaccactaaaaggatttgtgtattctttataaggcaaggaagatatgaa |
249 |
Q |
| |
|
||||||| ||||||| | || || |||||||||||||||||||| ||| || | ||||||| ||| ||||||||||| ||||||||||||||||| |
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|
| T |
51482364 |
ccatgtctggctttagaacattttcaggcaacttcacagcaaggttaagaatgcctttgaaaggatctgtatattctttatacggcaaggaagatatgaa |
51482265 |
T |
|
| Q |
250 |
ctcagcatgatgacgagg |
267 |
Q |
| |
|
||||||| ||||||||| |
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|
| T |
51482264 |
ctcagcacaatgacgagg |
51482247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 50 - 267
Target Start/End: Complemental strand, 51499165 - 51498948
Alignment:
| Q |
50 |
ttgaagcatactgcatcagacacatcacaatggagcttagtcacagaatcaccacgtccgagattctgagcaaatccataagcaatatatgttcttggcc |
149 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||||||| || || || | |||| ||||||||||||||||||||||| |||| | |
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|
| T |
51499165 |
ttgaagcatactgcatcagacatatcacaatgaagcttagtcacagaatcaccccgcccaagttcctgatcaaatccataagcaatatatgtttttggtc |
51499066 |
T |
|
| Q |
150 |
ccatgtcaggctttacacaataatccggcaacttcacagcaaggttgagagaaccactaaaaggatttgtgtattctttataaggcaaggaagatatgaa |
249 |
Q |
| |
|
|||| || ||||||| | || || |||||||| ||||||||||| ||| ||| | ||||||| ||| ||||||||||| ||||||||||||||||| |
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|
| T |
51499065 |
ccatatctggctttagaacattttcaggcaactttacagcaaggttaagaacacctttgaaaggatctgtatattctttatacggcaaggaagatatgaa |
51498966 |
T |
|
| Q |
250 |
ctcagcatgatgacgagg |
267 |
Q |
| |
|
||||||| ||||||||| |
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|
| T |
51498965 |
ctcagcacaatgacgagg |
51498948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 50 - 256
Target Start/End: Original strand, 30205003 - 30205209
Alignment:
| Q |
50 |
ttgaagcatactgcatcagacacatcacaatggagcttagtcacagaatcaccacgtccgagattctgagcaaatccataagcaatatatgttcttggcc |
149 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||||| || || || | |||||||||||||||||||||||||||| |||| | |
|
|
| T |
30205003 |
ttgaagcatactgcatctgacatatcacaatggagcttagtcacagaatcaccccgcccaagctcctgagcaaatccataagcaatatatgtttttgggc |
30205102 |
T |
|
| Q |
150 |
ccatgtcaggctttacacaataatccggcaacttcacagcaaggttgagagaaccactaaaaggatttgtgtattctttataaggcaaggaagatatgaa |
249 |
Q |
| |
|
||||||| |||| || | || | ||||||||| |||||||||| ||| |||| | ||||||| ||| |||||||| | ||||||||||||||||| |
|
|
| T |
30205103 |
ccatgtctggctgtaaaacatctttaggcaacttcgcagcaaggtttagaacaccattgaaaggatctgtatattctttgaacggcaaggaagatatgaa |
30205202 |
T |
|
| Q |
250 |
ctcagca |
256 |
Q |
| |
|
||||||| |
|
|
| T |
30205203 |
ctcagca |
30205209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 51440310 - 51440159
Alignment:
| Q |
50 |
ttgaagcatactgcatcagacacatcacaatggagcttagtcacagaatca-ccacgtccgagattctgagcaaatccataagcaa-tatatgttcttgg |
147 |
Q |
| |
|
||||||| |||||||||| |||||||| ||||||||||||||||| ||||| ||| ||| | | || ||| |||||||||| || || ||||| ||| |
|
|
| T |
51440310 |
ttgaagcttactgcatcacacacatcaaaatggagcttagtcacataatcaaccatgtcacaactcctaagctaatccataagaaaatacatgtttttga |
51440211 |
T |
|
| Q |
148 |
ccccatgtcaggctttacacaataatccggcaacttcacagcaaggttgagag |
200 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
51440210 |
cccg-tgtctggctttacacaataatccggcaacttcatagcaaggttgagag |
51440159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 41 - 271
Target Start/End: Complemental strand, 43162153 - 43161923
Alignment:
| Q |
41 |
aaaaaggttttgaagcatactgcatcagacacatcacaatggagcttagtcacagaatcaccacgtccgagattctgagcaaatccataagcaatatatg |
140 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| |||||||||||||||||| ||||| || ||||| |||| ||||| |||||||||||||||||||| |
|
|
| T |
43162153 |
aaaaaggtttcgaagcatactgcatcaaacacattacaatggagcttagtcacggaatccccgcgtccaagatcctgaggaaatccataagcaatatatg |
43162054 |
T |
|
| Q |
141 |
ttcttggccccatgtcaggctttacacaataatccggcaacttcacagcaaggttgagagaaccactaaaaggatttgtgtattctttataaggcaagga |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
43162053 |
ttcttggccccatgtcaggctttacacaataatccggcaacttcacagcaaggttgagagaaccactaaatggatttgtatattctttataaggcaagga |
43161954 |
T |
|
| Q |
241 |
agatatgaactcagcatgatgacgaggtaaa |
271 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |
|
|
| T |
43161953 |
agttatgaactcagcatgatgacgaggtaaa |
43161923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 53 - 271
Target Start/End: Complemental strand, 27397805 - 27397587
Alignment:
| Q |
53 |
aagcatactgcatcagacacatcacaatggagcttagtcacagaatcaccacgtccgagattctgagcaaatccataagcaatatatgttcttggcccca |
152 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||| |||||||| ||||| || | |||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
27397805 |
aagcatactgcatcagacatatcacaatggagcctagtcactgaatcaccccgtccaagctcctgagcaaatccataagcaatatatgtttttggtccca |
27397706 |
T |
|
| Q |
153 |
tgtcaggctttacacaataatccggcaacttcacagcaaggttgagagaaccactaaaaggatttgtgtattctttataaggcaaggaagatatgaactc |
252 |
Q |
| |
|
|||| ||||||| | | ||| |||| |||||||||||||||||||| ||| | ||||||||||| ||||||||| | |||||||||||||||||||| |
|
|
| T |
27397705 |
tgtctggctttagaacttcatcaggcagcttcacagcaaggttgagagcacctttgaaaggatttgtatattctttaaatggcaaggaagatatgaactc |
27397606 |
T |
|
| Q |
253 |
agcatgatgacgaggtaaa |
271 |
Q |
| |
|
||| |||||| |||||| |
|
|
| T |
27397605 |
cgcacaatgacgcggtaaa |
27397587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 20867541 - 20867643
Alignment:
| Q |
50 |
ttgaagcatactgcatcagacacatcacaatggagcttagtcacagaatcaccacgtccgagattctgagcaaatccataagcaatatatgttcttggcc |
149 |
Q |
| |
|
||||| |||||| ||||||||| ||||||||| |||||||||||||||||||| || || || | |||| |||||||||||||||||||||| |||| | |
|
|
| T |
20867541 |
ttgaaacatactacatcagacatatcacaatgtagcttagtcacagaatcaccccgcccaagctcctgatgaaatccataagcaatatatgtttttggtc |
20867640 |
T |
|
| Q |
150 |
cca |
152 |
Q |
| |
|
||| |
|
|
| T |
20867641 |
cca |
20867643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 252
Target Start/End: Original strand, 6791 - 6993
Alignment:
| Q |
50 |
ttgaagcatactgcatcagacacatcacaatggagcttagtcacagaatcaccacgtccgagattctgagcaaatccataagcaatatatgttcttggcc |
149 |
Q |
| |
|
||||||||||||||||| |||| || ||||||||||| ||||||||||||||| ||| || | || |||||||||||||||||| |||| | |||||| |
|
|
| T |
6791 |
ttgaagcatactgcatccgacatgtcgcaatggagctttgtcacagaatcaccaaatccaagctccttagcaaatccataagcaatgtatgcttttggcc |
6890 |
T |
|
| Q |
150 |
ccatgtcaggctttacacaataatccggcaacttcacagcaaggttgagagaaccactaaaaggatttgtgtattctttataaggcaaggaagatatgaa |
249 |
Q |
| |
|
||||||| ||||||| ||| ||| || |||||||| |||||||| | ||||||||| | ||||| ||||||||||||||| |||||| |||||| ||| |
|
|
| T |
6891 |
ccatgtctggctttagccaaccatcaggaaacttcacggcaaggttaatagaaccacttacaggatgtgtgtattctttatacggcaagtaagatacgaa |
6990 |
T |
|
| Q |
250 |
ctc |
252 |
Q |
| |
|
||| |
|
|
| T |
6991 |
ctc |
6993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 156
Target Start/End: Complemental strand, 4299727 - 4299623
Alignment:
| Q |
52 |
gaagcatactgcatcagacacatcacaatggagcttagtcacagaatcaccacgtccgagattctgagcaaatccataagcaatatatgttcttggcccc |
151 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||||||| ||||||||||| | || || | ||||| |||||||||||||||||||||| |||| ||| |
|
|
| T |
4299727 |
gaagcatactgcatgagacatatcacaatagagcttagtgacagaatcaccccacccaagctcctgagaaaatccataagcaatatatgtttttgggccc |
4299628 |
T |
|
| Q |
152 |
atgtc |
156 |
Q |
| |
|
||||| |
|
|
| T |
4299627 |
atgtc |
4299623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 136201 - 136292
Alignment:
| Q |
50 |
ttgaagcatactgcatcagacacatcacaatggagcttagtcacagaatcaccacgtccgagattctgagcaaatccataagcaatatatgt |
141 |
Q |
| |
|
||||| |||||| ||||||||| ||||||||||||||| ||||| |||||||| || || || | || || |||||||||||||| |||||| |
|
|
| T |
136201 |
ttgaaacatactacatcagacatatcacaatggagctttgtcacggaatcaccccgcccaagctcctcagaaaatccataagcaaaatatgt |
136292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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