View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19342_low_12 (Length: 268)
Name: NF19342_low_12
Description: NF19342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19342_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 2386071 - 2386315
Alignment:
| Q |
1 |
gttgctcaaaatccttcttcccaacagctacctcctttaacctcttcacaacaactgtggttgcatcctctagtaccgccttgtacgcagcaccgaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
2386071 |
gttgctcaaaatccttcttcccaacagctacctcctttaacctcttcacaacaactgtggttgcatcctctaataccgccttgtacgcagcaccaaatgt |
2386170 |
T |
|
| Q |
101 |
tcccttaccaagtacctcagcagaagcccttaataaatcctccaaatcaaaagcatagttacatccctcaaagnnnnnnngcttattatttgcatcttgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2386171 |
tcccttaccaagtacctcagcagaagcccttaataaatcctccaaatcaaaagcatagttacatccctcaaagaaaaaaagcttattatttgcatcttgg |
2386270 |
T |
|
| Q |
201 |
tttcttgagaccactttttcaggagacatttttcctcctttctcc |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2386271 |
tttcttgagaccactttttcaggagacatttttcctcctttctcc |
2386315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 173
Target Start/End: Complemental strand, 41729997 - 41729826
Alignment:
| Q |
2 |
ttgctcaaaatccttcttcccaacagctacctcctttaacctcttcacaacaactgtggttgcatcctctagtaccgccttgtacgcagcaccgaatgtt |
101 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||| ||||||||||||||||| | || || ||||| || | |||||| || |||| ||| || ||| |
|
|
| T |
41729997 |
ttgctcaaaatccttctttccaaaggctacttccttcaacctcttcacaacaaccgcagtcgcgtcctcaagaatcgccttataagcagtaccaaacgtt |
41729898 |
T |
|
| Q |
102 |
cccttaccaagtacctcagcagaagcccttaataaatcctccaaatcaaaagcatagttacatccctcaaag |
173 |
Q |
| |
|
||||| || || |||||||||||||| || || ||||| ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
41729897 |
ccctttcccagcacctcagcagaagctctcaacaaatcttccaaatcaaatgcataattacatccctcaaag |
41729826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 151
Target Start/End: Original strand, 25390765 - 25390803
Alignment:
| Q |
113 |
tacctcagcagaagcccttaataaatcctccaaatcaaa |
151 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25390765 |
tacctcagcagaagcccttaacaaatcctccaaatcaaa |
25390803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University