View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19342_low_14 (Length: 237)
Name: NF19342_low_14
Description: NF19342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19342_low_14 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 15007828 - 15007603
Alignment:
| Q |
20 |
caatctcaacaaaacatcataaaaagaagtaacgagaatcaatattacctcaagttgatgcgaaaatttatttgaact---tcacatgatttgaattatg |
116 |
Q |
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|||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15007828 |
caatctcaacaaaacatcgtaaaaagaagtaatgtgaatcaatattaccttaagttcatgcgaaaatttatttgaactaattcacatgatttgaattatg |
15007729 |
T |
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| Q |
117 |
aggcataactaaaagacaattatagaaaattgtatgatgagagccataagtattatatgatataggttggattcaattttatataatatc-----tgtta |
211 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15007728 |
aggcctaactaaaagacaattatagaaaattgtatgatgagagccataagtattatatgatataggttggattcaattttatataatatcttcaatgtta |
15007629 |
T |
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| Q |
212 |
taataccagctgctatatattgttca |
237 |
Q |
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|||||||||||||||||||||||||| |
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| T |
15007628 |
taataccagctgctatatattgttca |
15007603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 40787439 - 40787227
Alignment:
| Q |
18 |
agcaatctcaacaaaacatcataaaaagaagtaacgagaatcaatattacctcaagttgatgcgaaaatttatttgaacttcacatgatttgaattatga |
117 |
Q |
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|||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||| |
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| T |
40787439 |
agcaatctcaactaaatatcataaaaagaagtaatgagaatcaatattacctcaagatcatgcgaaaatttatttaaacttcacatgatttgaattatga |
40787340 |
T |
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| Q |
118 |
ggcataactaaaagacaattatagaaaattgtatgatgagagccataagtattatatgatataggttggattcaattttatataata---tctgttataa |
214 |
Q |
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| T |
40787339 |
ggcataactaaa----------tgaaaattgtatgatgagagccataagtattatatgatataggttggattcaattttatataatatcttctgttataa |
40787250 |
T |
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| Q |
215 |
taccagctgctatatattgttca |
237 |
Q |
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||||||||||||||||||||||| |
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| T |
40787249 |
taccagctgctatatattgttca |
40787227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 21143307 - 21143251
Alignment:
| Q |
18 |
agcaatctcaacaaaacatcataaaaagaagtaacgagaatcaatattacctcaagt |
74 |
Q |
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| T |
21143307 |
agcaatctcaacaaaacatcataaaaagaagtaacgagaatcaatattaccacaagt |
21143251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 52311116 - 52311151
Alignment:
| Q |
39 |
taaaaagaagtaacgagaatcaatattacctcaagt |
74 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
52311116 |
taaaaagaagtaacgagaatcaatattacctcaagt |
52311151 |
T |
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