View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19342_low_16 (Length: 204)
Name: NF19342_low_16
Description: NF19342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19342_low_16 |
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| [»] scaffold0518 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 24840437 - 24840608
Alignment:
| Q |
16 |
aatattgtattttgagttataacattgagttggtgcttgtcatgacgatgttatatcnnnnnnnctgacgaaaaatgacgatttggtatcttagagacta |
115 |
Q |
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| T |
24840437 |
aatattttattttgagttataacattgagttggtgcttgtcatgacgatgttatatctttttttctgacgaaaaatgacgatttggtatcttagagacta |
24840536 |
T |
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| Q |
116 |
cataaaatttataatggctaagttaatataagacattaacaatagagtttaaaacttcaaaatatggatctt |
187 |
Q |
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| T |
24840537 |
cataaaatttataatggctaagttaatataagacattaacaattgagtttaaaacttcaaaatatggatctt |
24840608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 24843895 - 24844068
Alignment:
| Q |
16 |
aatattgtattttgagttataacattgagttggtgcttgtcatgacgatgttatatcnnnnnnn--ctgacgaaaaatgacgatttggtatcttagagac |
113 |
Q |
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| T |
24843895 |
aatattttattttgagttataacattgagttggtgcttgtcatgacgatgttatatctttttttttctgacgaaaaatggcgatttggtatcttagagac |
24843994 |
T |
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| Q |
114 |
tacataaaatttataatggctaagttaatataagacattaacaatagagtttaaaacttcaaaatatggatctt |
187 |
Q |
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| T |
24843995 |
aacataaaatttataatggctaagttaatataagacattaacaatagagtttaagacttcaaaatttggatctt |
24844068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 83 - 187
Target Start/End: Original strand, 24760604 - 24760706
Alignment:
| Q |
83 |
acgaaaaatgacgatttggtatcttagagactacataaaatttataatggctaagttaatataagacattaacaatagagtttaaaacttcaaaatatgg |
182 |
Q |
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||||||||| | |||||||||||| ||| || ||| |||||||||||||||||||| || |||||||||| |||||||||||||||||||||||| ||| |
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| T |
24760604 |
acgaaaaatcatgatttggtatctcaga--ctgcatgaaatttataatggctaagttcatttaagacattaccaatagagtttaaaacttcaaaatctgg |
24760701 |
T |
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| Q |
183 |
atctt |
187 |
Q |
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||||| |
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| T |
24760702 |
atctt |
24760706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 24755171 - 24755239
Alignment:
| Q |
120 |
aaatttataatggctaagttaatataagacattaacaatagagtttaaaactt-caaaatatggatctt |
187 |
Q |
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| T |
24755171 |
aaatttataatggttaagatcatataagacattaacaatagagtttaaaacttccaaaatctggatctt |
24755239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 12333262 - 12333308
Alignment:
| Q |
141 |
atataagacattaacaatagagtttaaaacttcaaaatatggatctt |
187 |
Q |
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| T |
12333262 |
atataagatattaacaaaagatattaaaacttcaaaatatggatctt |
12333308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 24760530 - 24760580
Alignment:
| Q |
16 |
aatattgtattttgagttataacattgagttggtgcttgtcatgacgatgt |
66 |
Q |
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|||||| ||||||||||||| ||||||||||| | |||||||||| ||||| |
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| T |
24760530 |
aatattttattttgagttatgacattgagttgctacttgtcatgatgatgt |
24760580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 24755066 - 24755110
Alignment:
| Q |
16 |
aatattgtattttgagttataacattgagttggtgcttgtcatga |
60 |
Q |
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| T |
24755066 |
aatattttattttgagttatgacattgagttgctacttgtcatga |
24755110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0518 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0518
Description:
Target: scaffold0518; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 1399 - 1347
Alignment:
| Q |
135 |
aagttaatataagacattaacaatagagtttaaaacttcaaaatatggatctt |
187 |
Q |
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||||| ||||||| |||||||||||||| ||| ||| ||||||||| |||||| |
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| T |
1399 |
aagttcatataaggcattaacaatagagattagaacatcaaaatatagatctt |
1347 |
T |
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