View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19342_low_3 (Length: 572)
Name: NF19342_low_3
Description: NF19342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19342_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 14 - 554
Target Start/End: Complemental strand, 6146795 - 6146253
Alignment:
| Q |
14 |
attattctcacatgtgttatgactttctctttgcttatttttgtgattggaagcaaattttatcgttataggataccaaatggaagccctttggctccaa |
113 |
Q |
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| T |
6146795 |
attattctcacatgtgttatgactttctctttgcttatttttgtgattggaagcaaattttatcgttataggataccaaatggaagccctttgactccaa |
6146696 |
T |
|
| Q |
114 |
tgttgcaagttattgttgctgcaatttctaagagaaagcttccttatccttctaatccaactcaattgtatgaagtttctaaggctgaggggaataatgg |
213 |
Q |
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| T |
6146695 |
tgttgcaagttattgttgcagcaatttctaagagaaagcttccttatccttctaatccaactcaattgtatgaagtttctaaggctgaggggaataatgg |
6146596 |
T |
|
| Q |
214 |
aagacttttggctcataccaagaaactcaagtaagtatttcattaatgattttaaattactattattcaaattg-aaaagnnnnnnnntatgtaggaaaa |
312 |
Q |
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| T |
6146595 |
aagacttttggctcataccaagaaactcaagtaagtatttcattaatgattttagattactattattcaaattgaaaaaaaaaatatatatgtaggaaaa |
6146496 |
T |
|
| Q |
313 |
gacgagtc-ttacaatcaaagtttcaattacggacatgatcactggtatttttaaaactagagcgtcttgttttcacggtagtcccatttcttttgatca |
411 |
Q |
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| T |
6146495 |
gacgagtctttacaatcaaagtttcaattacggacatgatcactggtatttttaaaactagagcgtcttgttttcacggtagtcccatttgttttgatca |
6146396 |
T |
|
| Q |
412 |
agttccattccaaaatgtagtgaggatctcatcttaaatgaaatgcaataacttggtaaacaagtaatcataaattatttgatggtacatttctttttca |
511 |
Q |
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| T |
6146395 |
agttccattctaaaatgtagtgaggatctcatcttaaatgaaatgcaataacttggtaaacaagtaatcataaattatttgatggtacatttctttttca |
6146296 |
T |
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| Q |
512 |
gattttttgacaaggcagcaatagttgaaagtgaaggaaattt |
554 |
Q |
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| T |
6146295 |
gattttttgacaaggcagcaatagttgaaagtgaaggaaattt |
6146253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 23693855 - 23693730
Alignment:
| Q |
71 |
ttttatcgttataggataccaaatggaagccctttggctccaatgttgcaagttattgttgctgcaatttctaagagaaagcttccttatccttctaatc |
170 |
Q |
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||||||||||||||| |||||| ||| || |||||| ||||||||||||||||| |||||||||| ||||||| || |||||||||||||||||||||| |
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| T |
23693855 |
ttttatcgttatagggtaccaagtgggagtcctttgactccaatgttgcaagttcttgttgctgccttttctaaaaggaagcttccttatccttctaatc |
23693756 |
T |
|
| Q |
171 |
caactcaattgtatgaagtttctaag |
196 |
Q |
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| T |
23693755 |
ctgatcaattgtatgaggtttctaag |
23693730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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