View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19342_low_4 (Length: 545)

Name: NF19342_low_4
Description: NF19342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19342_low_4
NF19342_low_4
[»] chr5 (20 HSPs)
chr5 (1-527)||(40786592-40787151)
chr5 (395-466)||(24228363-24228434)
chr5 (395-466)||(24213370-24213441)
chr5 (248-341)||(29742029-29742119)
chr5 (345-395)||(24228292-24228342)
chr5 (255-341)||(32928939-32929022)
chr5 (400-483)||(35074208-35074292)
chr5 (340-395)||(24213294-24213349)
chr5 (394-487)||(16633354-16633446)
chr5 (279-341)||(24213214-24213273)
chr5 (446-492)||(21575048-21575094)
chr5 (446-487)||(17604690-17604731)
chr5 (395-487)||(35105030-35105122)
chr5 (402-464)||(19479552-19479614)
chr5 (255-313)||(31108917-31108975)
chr5 (313-341)||(24228239-24228267)
chr5 (460-507)||(25214564-25214609)
chr5 (460-507)||(25278714-25278759)
chr5 (258-290)||(28663533-28663565)
chr5 (347-395)||(31109011-31109058)
[»] chr8 (5 HSPs)
chr8 (1-289)||(15007260-15007561)
chr8 (401-506)||(29185623-29185726)
chr8 (248-341)||(22274915-22275005)
chr8 (253-313)||(28350468-28350528)
chr8 (341-388)||(29185542-29185589)
[»] chr3 (12 HSPs)
chr3 (1-149)||(39459480-39459630)
chr3 (395-506)||(20463207-20463318)
chr3 (395-506)||(20458842-20458952)
chr3 (395-466)||(13639624-13639695)
chr3 (401-506)||(20459075-20459180)
chr3 (14-83)||(39459189-39459258)
chr3 (395-487)||(7642305-7642396)
chr3 (395-487)||(21587214-21587306)
chr3 (400-487)||(44122085-44122172)
chr3 (285-341)||(38419988-38420041)
chr3 (346-395)||(13639716-13639765)
chr3 (349-389)||(20458775-20458815)
[»] chr2 (8 HSPs)
chr2 (395-466)||(25232018-25232089)
chr2 (400-466)||(25225713-25225779)
chr2 (258-341)||(7394643-7394723)
chr2 (402-487)||(19912279-19912364)
chr2 (394-483)||(45276354-45276443)
chr2 (341-388)||(25232117-25232164)
chr2 (259-313)||(19084695-19084749)
chr2 (340-386)||(25225814-25225860)
[»] chr6 (1 HSPs)
chr6 (395-466)||(19441220-19441291)
[»] chr1 (17 HSPs)
chr1 (395-466)||(18640580-18640650)
chr1 (395-466)||(29547775-29547846)
chr1 (395-486)||(28201725-28201817)
chr1 (279-341)||(27417327-27417390)
chr1 (395-466)||(29530120-29530191)
chr1 (405-483)||(32808782-32808859)
chr1 (273-341)||(36686843-36686908)
chr1 (395-487)||(11444112-11444204)
chr1 (190-289)||(26023656-26023756)
chr1 (400-461)||(18643285-18643346)
chr1 (340-388)||(11444036-11444084)
chr1 (276-341)||(11443954-11444016)
chr1 (347-382)||(18643228-18643263)
chr1 (340-389)||(11441667-11441716)
chr1 (253-336)||(18643116-18643196)
chr1 (279-341)||(11441588-11441647)
chr1 (347-395)||(15552979-15553026)
[»] chr4 (11 HSPs)
chr4 (261-341)||(12753587-12753664)
chr4 (258-341)||(17350010-17350090)
chr4 (394-466)||(26654461-26654533)
chr4 (279-315)||(28874334-28874370)
chr4 (449-487)||(5350929-5350967)
chr4 (403-484)||(18902153-18902234)
chr4 (400-485)||(51700361-51700446)
chr4 (395-507)||(56341873-56341983)
chr4 (398-466)||(7895117-7895185)
chr4 (395-487)||(12746623-12746715)
chr4 (279-315)||(46694139-46694174)
[»] scaffold0066 (1 HSPs)
scaffold0066 (279-341)||(11794-11853)
[»] chr7 (5 HSPs)
chr7 (395-487)||(7578536-7578628)
chr7 (412-487)||(35339066-35339141)
chr7 (279-341)||(42939966-42940025)
chr7 (395-466)||(42129528-42129599)
chr7 (446-487)||(14719460-14719501)


Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 40787151 - 40786592
Alignment:
Q  1 tgttaatacagagatcacaactttgataacaaatggtcattcaagaattcaacaactaatgagtacataaaaacaatgaatttcaacgcatcaactaatg 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  40787151 tgttaatacagagatcacaactttgataacaaatcgtcattcaaaaattcaacaactaatgagtaaataaaaacaatgaatttcaacgcatcaagtaatg 40787052  T
Q  101 atgatggaggcaaatcataacagtcagagaagggattgcagaaacatacttatatataacttatatacatcatgttgcta-------------acatttt 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||    
T  40787051 atgatggaggcaaatcataacagtcagagaagggattgcagaaacatacttatatataacttatatacatcatgttgctattagaatttctacacatttt 40786952  T
Q  188 ctatacgtacaagcatacaacacaataagttctatcataaaaaacaagaattagtattacctcaaattggtagagcttcgtgccgataacgtgttatgaa 287  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||  |||| ||||||||||    
T  40786951 ctatacgtacaagcatacaacacaataagttatatcataaaaaacaagaattagtattacctcaaattggcatagcttcgtgctcataatgtgttatgaa 40786852  T
Q  288 attgatccttagcattgcaagatattattataaagtatataagaatagagag---------------------aagagtgtattgtattacttcacaagt 366  Q
    |||||| |||||||||||||||   |||||||||||||||||||||||||||                     |||||||||||||||||||||||||||    
T  40786851 attgattcttagcattgcaaga---tattataaagtatataagaatagagagaaagaaacaaagagagaacataagagtgtattgtattacttcacaagt 40786755  T
Q  367 gtgttatttacattacaatatagatcctaagtaaatgatcaaaccaattaaggaccac--taaccatacatttactactgagggttataggaaggtggaa 464  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||||  ||||||||||||||||| || |||||||||||||||||||    
T  40786754 gtgttctttacattacaatataggtcctaagtgaatgatcaaatcaattaaggaccactataaccatacatttactaatgggggttataggaaggtggaa 40786655  T
Q  465 gaccaagaatggacatccactaacttataattattcataacatgtagtaagtagttgactcat 527  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40786654 gaccaagaatgaacatccactaacttataattattcataacatgtagtaagtagttgactcat 40786592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 395 - 466
Target Start/End: Original strand, 24228363 - 24228434
Alignment:
Q  395 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 466  Q
    |||| |||||||||||||||||| ||||| ||||||||||| || || ||||||||||||||||||||||||    
T  24228363 aagtgaatgatcaaaccaattaaagaccaataaccatacatatattaatgagggttataggaaggtggaaga 24228434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 395 - 466
Target Start/End: Original strand, 24213370 - 24213441
Alignment:
Q  395 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 466  Q
    |||| |||||||||||||||||| ||||| ||||||||||||||||| ||  ||||||| ||||||||||||    
T  24213370 aagtgaatgatcaaaccaattaaagaccaataaccatacatttactaatggaggttataagaaggtggaaga 24213441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 248 - 341
Target Start/End: Original strand, 29742029 - 29742119
Alignment:
Q  248 ctcaaattggtagagcttcgtgccgataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 341  Q
    |||| |||| ||||||||||||| ||||||||||||||||||| ||||   |||||||||   | |||| ||||||||||||||||||||||||    
T  29742029 ctcagattgatagagcttcgtgctgataacgtgttatgaaattaatccaatgcattgcaa---aatattgtaaagtatataagaatagagagaa 29742119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 395
Target Start/End: Original strand, 24228292 - 24228342
Alignment:
Q  345 tgtattgtattacttcacaagtgtgttatttacattacaatatagatccta 395  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  24228292 tgtattgtattacttcacaagtgtgtactttacattacaatatagatccta 24228342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 32929022 - 32928939
Alignment:
Q  255 tggtagagcttcgtgccgataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 341  Q
    ||||| |||||||||  ||||||||||| ||||||||||| ||| ||||||||||   ||| |||||| ||||||||||||||||||    
T  32929022 tggtaaagcttcgtgttgataacgtgttttgaaattgatcattaacattgcaaga---tatcataaagcatataagaatagagagaa 32928939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 35074208 - 35074292
Alignment:
Q  400 aatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagac-caagaatggacatcca 483  Q
    |||||||||| ||||||||||||||||| |||||||| |||| ||||  ||||||||||||| |||||  ||| |||||||||||    
T  35074208 aatgatcaaagcaattaaggaccactaatcatacattcactagtgagaattataggaaggtgaaagacttaaggatggacatcca 35074292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 24213294 - 24213349
Alignment:
Q  340 aagagtgtattgtattacttcacaagtgtgttatttacattacaatatagatccta 395  Q
    ||||||||||||||||||||||||||| |||  ||||||||||||||||| |||||    
T  24213294 aagagtgtattgtattacttcacaagtatgtactttacattacaatataggtccta 24213349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 487
Target Start/End: Original strand, 16633354 - 16633446
Alignment:
Q  394 taagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaa 487  Q
    ||||| ||||||||||  |||||||| |||||||| || || |  ||| || |||||||||||||||||||||| ||| |||||||||||||||    
T  16633354 taagtgaatgatcaaagtaattaaggtccactaactattcactcgctaatg-gggttataggaaggtggaagactaaggatggacatccactaa 16633446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 24213214 - 24213273
Alignment:
Q  279 tgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 341  Q
    |||||||||||||||||||||||||| ||||   ||||||||||||||||| | |||||||||    
T  24213214 tgttatgaaattgatccttagcattgtaaga---tattataaagtatataacattagagagaa 24213273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 446 - 492
Target Start/End: Original strand, 21575048 - 21575094
Alignment:
Q  446 gggttataggaaggtggaagaccaagaatggacatccactaacttat 492  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  21575048 gggttataggaaggtggaagactaaggatggacatccactaagttat 21575094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 446 - 487
Target Start/End: Complemental strand, 17604731 - 17604690
Alignment:
Q  446 gggttataggaaggtggaagaccaagaatggacatccactaa 487  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  17604731 gggttataggaaggtggaagactaaggatggacatccactaa 17604690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 487
Target Start/End: Complemental strand, 35105122 - 35105030
Alignment:
Q  395 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaa 487  Q
    |||| ||||||||||  ||||||||| |||||||||| |||| |||  || | ||||| | |||||| ||||| ||| |||||||||||||||    
T  35105122 aagtgaatgatcaaagtaattaaggatcactaaccatccattcacttatgggagttattgcaaggtgtaagactaaggatggacatccactaa 35105030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 464
Target Start/End: Original strand, 19479552 - 19479614
Alignment:
Q  402 tgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaa 464  Q
    |||||||  ||||||||| |||||||| || || |||||| |||| |||||||||||||||||    
T  19479552 tgatcaaggcaattaaggtccactaactattcacttactaatgagagttataggaaggtggaa 19479614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 31108917 - 31108975
Alignment:
Q  255 tggtagagcttcgtgccgataacgtgttatgaaattgatccttagcattgcaagatatt 313  Q
    ||||||||| || | ||||||||||||||||||||| |||  ||||||||||| |||||    
T  31108917 tggtagagcatcataccgataacgtgttatgaaattaatctatagcattgcaaaatatt 31108975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 24228239 - 24228267
Alignment:
Q  313 tattataaagtatataagaatagagagaa 341  Q
    |||||||||||||||||||||||||||||    
T  24228239 tattataaagtatataagaatagagagaa 24228267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 507
Target Start/End: Original strand, 25214564 - 25214609
Alignment:
Q  460 tggaagaccaagaatggacatccactaacttataattattcataacat 507  Q
    ||||||| ||||||||||||||||||||||  | ||||||||||||||    
T  25214564 tggaagatcaagaatggacatccactaact--ttattattcataacat 25214609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 507
Target Start/End: Original strand, 25278714 - 25278759
Alignment:
Q  460 tggaagaccaagaatggacatccactaacttataattattcataacat 507  Q
    ||||||| ||||||||||||||||||||||  | ||||||||||||||    
T  25278714 tggaagatcaagaatggacatccactaact--ttattattcataacat 25278759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 28663533 - 28663565
Alignment:
Q  258 tagagcttcgtgccgataacgtgttatgaaatt 290  Q
    ||||||||||||| |||||||||||||||||||    
T  28663533 tagagcttcgtgctgataacgtgttatgaaatt 28663565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 31109011 - 31109058
Alignment:
Q  347 tattgtattacttcacaagtgtgttatttacattacaatatagatccta 395  Q
    |||| ||||||||||||||||||| | ||||||| ||||||||||||||    
T  31109011 tattatattacttcacaagtgtgtca-ttacattgcaatatagatccta 31109058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 15007561 - 15007260
Alignment:
Q  1 tgttaatacagagatcacaactttgataacaaatggtcattcaagaattcaacaactaatgagtacataaaaacaatgaatttcaacgcatcaactaatg 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15007561 tgttaatacagagatcgcaactttgataacaaatggtcattcaagaattcaacaactaatgagtaaataaaaacaatgaatttcaacgcatcaactaatg 15007462  T
Q  101 atgatggaggcaaatcataacagtcagagaagggattgcagaaacatacttatatataacttatatacatcatgttgcta-------------acatttt 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||    
T  15007461 atgatggaggcaaatcataacagtcagagaagggattgcagaaacatacttatatataacttatatacatcatgttgctattagaatttctacacatttt 15007362  T
Q  188 ctatacgtacaagcatacaacacaataagttctatcataaaaaacaagaattagtattacctcaaattggtagagcttcgtgccgataacgtgttatgaa 287  Q
    ||||||||||||||||||| |||||| |||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  15007361 ctatacgtacaagcatacagcacaattagttatataataaaaaacaagaattagtattacctcaaattgatagagcttcgtgctgagaacgtgttatgaa 15007262  T
Q  288 at 289  Q
    ||    
T  15007261 at 15007260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 401 - 506
Target Start/End: Original strand, 29185623 - 29185726
Alignment:
Q  401 atgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaacttataattattc 500  Q
    |||||||||| ||||||||||||| ||||||| |||||||| || || |||||||||||||||||| ||||||||||||||||| ||||  | |||||||    
T  29185623 atgatcaaacgaattaaggaccacaaaccatatatttactaatggggattataggaaggtggaagatcaagaatggacatccaccaact--ttattattc 29185720  T
Q  501 ataaca 506  Q
    ||||||    
T  29185721 ataaca 29185726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 248 - 341
Target Start/End: Complemental strand, 22275005 - 22274915
Alignment:
Q  248 ctcaaattggtagagcttcgtgccgataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 341  Q
    |||| |||| ||||||||||||  ||||||||||||||||||| ||||  ||||||||||||   |||| ||||||||||||||||||||||||    
T  22275005 ctcatattgatagagcttcgtgttgataacgtgttatgaaattaatccaaagcattgcaaga---tattgtaaagtatataagaatagagagaa 22274915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 313
Target Start/End: Original strand, 28350468 - 28350528
Alignment:
Q  253 attggtagagcttcgtgccgataacgtgttatgaaattgatccttagcattgcaagatatt 313  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||  || |||||||||||||    
T  28350468 attgatagagcttcgtgctgataacgtgttatgaaattaatccaaagtattgcaagatatt 28350528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 341 - 388
Target Start/End: Original strand, 29185542 - 29185589
Alignment:
Q  341 agagtgtattgtattacttcacaagtgtgttatttacattacaatata 388  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  29185542 agagtatattgcattacttcacaagtgtgttttttacattacaatata 29185589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 5e-42; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 39459480 - 39459630
Alignment:
Q  1 tgttaatacaga--gatcacaactttgataacaaatggtcattcaagaattcaacaactaatgagtacataaaaacaatgaatttcaacgcatcaactaa 98  Q
    ||||||||||||  ||||||  ||||| ||| ||||||||||||  ||||||||||||||||||||| |||||| || ||||||| ||||||||||||||    
T  39459480 tgttaatacagaaagatcactgctttgctaaaaaatggtcattcgtgaattcaacaactaatgagtaaataaaagcactgaatttgaacgcatcaactaa 39459579  T
Q  99 tgatgatggaggcaaatcataacagtcagagaagggattgcagaaacatac 149  Q
    ||||||||||||||  ||||||||||||||||||||| |||||||||||||    
T  39459580 tgatgatggaggcagctcataacagtcagagaagggactgcagaaacatac 39459630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 395 - 506
Target Start/End: Original strand, 20463207 - 20463318
Alignment:
Q  395 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaacttataa 494  Q
    |||| |||||||| | || |||||| |||||||||||||||| |||| |  || ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  20463207 aagtgaatgatcacagcatttaaggtccactaaccatacattcactaatagggattataggaaggaggaagactaagaatggacatccactaacttataa 20463306  T
Q  495 ttattcataaca 506  Q
    ||||||||||||    
T  20463307 ttattcataaca 20463318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 395 - 506
Target Start/End: Original strand, 20458842 - 20458952
Alignment:
Q  395 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaacttataa 494  Q
    |||| |||||||||| || ||||||  ||||||||| ||||| |||| || |||||||||||||||||||||  ||| ||||||||||||||||||||||    
T  20458842 aagtgaatgatcaaaacatttaaggttcactaaccaaacattcactaatg-gggttataggaaggtggaagattaaggatggacatccactaacttataa 20458940  T
Q  495 ttattcataaca 506  Q
    ||||||||||||    
T  20458941 ttattcataaca 20458952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 395 - 466
Target Start/End: Complemental strand, 13639695 - 13639624
Alignment:
Q  395 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 466  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||    
T  13639695 aagtgaatgatcaaaccaattaaggaccactaaccatacatttactaacgaaggttataggaaggtggaaga 13639624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 401 - 506
Target Start/End: Complemental strand, 20459180 - 20459075
Alignment:
Q  401 atgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaacttataattattc 500  Q
    ||||||||| || |||||| ||||||||||| |||| ||||  | || ||| ||||||||||||||| ||| ||| ||| ||||||||||||||||||||    
T  20459180 atgatcaaagcatttaaggtccactaaccatgcattcactaacggggattacaggaaggtggaagactaaggatgaacagccactaacttataattattc 20459081  T
Q  501 ataaca 506  Q
    ||||||    
T  20459080 ataaca 20459075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 39459189 - 39459258
Alignment:
Q  14 atcacaactttgataacaaatggtcattcaagaattcaacaactaatgagtacataaaaacaatgaattt 83  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||| ||||    
T  39459189 atcacagctttgatgacaaatggtcattcaagaatacaacaactaatgagtaaataaaaacaatgtattt 39459258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 395 - 487
Target Start/End: Complemental strand, 7642396 - 7642305
Alignment:
Q  395 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaa 487  Q
    |||||||||||||||  ||||||||||||||||||||| ||| |||| || |||||||||||||||||||||  ||  |||||||||||||||    
T  7642396 aagtaaatgatcaaagtaattaaggaccactaaccataaattcactaatg-gggttataggaaggtggaagattaaagatggacatccactaa 7642305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 487
Target Start/End: Original strand, 21587214 - 21587306
Alignment:
Q  395 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaa 487  Q
    |||| |||||||||| || ||||||| |||||||||||| || |||| || |||||||||||||||||||||  |||  |||||| |||||||    
T  21587214 aagtgaatgatcaaagcagttaaggatcactaaccatactttcactaatgggggttataggaaggtggaagattaagggtggacacccactaa 21587306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 487
Target Start/End: Original strand, 44122085 - 44122172
Alignment:
Q  400 aatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaa 487  Q
    ||||||||||   ||||||||||| ||| |||||||| |||| |   ||||||||||||||||||||  ||| |||||||||||||||    
T  44122085 aatgatcaaagtcattaaggaccattaagcatacattcactaatattggttataggaaggtggaagattaaggatggacatccactaa 44122172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 38420041 - 38419988
Alignment:
Q  285 gaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 341  Q
    |||||||||||||| ||||||||||||   ||||||||||| |||||||||||||||    
T  38420041 gaaattgatccttaacattgcaagata---ttataaagtatgtaagaatagagagaa 38419988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 395
Target Start/End: Complemental strand, 13639765 - 13639716
Alignment:
Q  346 gtattgtattacttcacaagtgtgttatttacattacaatatagatccta 395  Q
    ||||||||||  |||||||||||||| ||||||||||||||||| |||||    
T  13639765 gtattgtattgtttcacaagtgtgttctttacattacaatataggtccta 13639716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 20458775 - 20458815
Alignment:
Q  349 ttgtattacttcacaagtgtgttatttacattacaatatag 389  Q
    ||||||| |||| |||||||||| |||||||||||||||||    
T  20458775 ttgtattgcttctcaagtgtgttctttacattacaatatag 20458815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 395 - 466
Target Start/End: Complemental strand, 25232089 - 25232018
Alignment:
Q  395 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 466  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||    
T  25232089 aagtgaatgatcaaaccaattaaggaccactaaccatacatttactaatgggagttataggaaggtggaaga 25232018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 466
Target Start/End: Complemental strand, 25225779 - 25225713
Alignment:
Q  400 aatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 466  Q
    ||||||||||||||||||| | |||||||||||||||||||| |||| |||||| ||||||||||||    
T  25225779 aatgatcaaaccaattaagaatcactaaccatacatttactaatgagagttatatgaaggtggaaga 25225713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 341
Target Start/End: Original strand, 7394643 - 7394723
Alignment:
Q  258 tagagcttcgtgccgataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 341  Q
    ||||| ||||||| ||||||||||||||||||| ||||  |||||||| |||   ||||||||||||||||| |||||||||||    
T  7394643 tagagtttcgtgctgataacgtgttatgaaattaatccaaagcattgctaga---tattataaagtatataaaaatagagagaa 7394723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 487
Target Start/End: Complemental strand, 19912364 - 19912279
Alignment:
Q  402 tgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaa 487  Q
    |||||||| ||||||||||| |||||||||||||| | || |  |||||||||||||||||||||  |||  ||||||||||||||    
T  19912364 tgatcaaagcaattaaggactactaaccatacattcaataataggggttataggaaggtggaagattaagggtggacatccactaa 19912279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 483
Target Start/End: Complemental strand, 45276443 - 45276354
Alignment:
Q  394 taagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatcca 483  Q
    ||||| |||| ||||| | |||||||||||||||||||||||| ||||    |||||||||||||||||||||  | | |||||||||||    
T  45276443 taagtgaatggtcaaaactattaaggaccactaaccatacattcactaacatgggttataggaaggtggaagatgagggatggacatcca 45276354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 341 - 388
Target Start/End: Complemental strand, 25232164 - 25232117
Alignment:
Q  341 agagtgtattgtattacttcacaagtgtgttatttacattacaatata 388  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||    
T  25232164 agagtgtattgtattgcttctcaagtgtgttctttacattacaatata 25232117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 19084749 - 19084695
Alignment:
Q  259 agagcttcgtgccgataacgtgttatgaaattgatccttagcattgcaagatatt 313  Q
    |||||||||||| |||||||||||||||||||||||   || |||||||||||||    
T  19084749 agagcttcgtgctgataacgtgttatgaaattgatcaaaagtattgcaagatatt 19084695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 386
Target Start/End: Complemental strand, 25225860 - 25225814
Alignment:
Q  340 aagagtgtattgtattacttcacaagtgtgttatttacattacaata 386  Q
    |||||||||||||||| |||| ||| |||||| ||||||||||||||    
T  25225860 aagagtgtattgtattgcttctcaactgtgttctttacattacaata 25225814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 395 - 466
Target Start/End: Original strand, 19441220 - 19441291
Alignment:
Q  395 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 466  Q
    |||| ||||||||||||| ||||||||||||||||||| |||||| | || |||||||||||||||||||||    
T  19441220 aagtgaatgatcaaaccatttaaggaccactaaccatagatttaccaatgggggttataggaaggtggaaga 19441291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 395 - 466
Target Start/End: Original strand, 18640580 - 18640650
Alignment:
Q  395 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 466  Q
    |||| |||||||||| |||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  18640580 aagtgaatgatcaaagcaattaaggaccactaaccatacattcactaatga-ggttataggaaggtggaaga 18640650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 395 - 466
Target Start/End: Complemental strand, 29547846 - 29547775
Alignment:
Q  395 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 466  Q
    |||| ||||||||||| |||||||||||||||||||| ||||||||| || || ||||||||||||||||||    
T  29547846 aagtgaatgatcaaacaaattaaggaccactaaccatgcatttactaatggggattataggaaggtggaaga 29547775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 486
Target Start/End: Original strand, 28201725 - 28201817
Alignment:
Q  395 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactg-agggttataggaaggtggaagaccaagaatggacatccacta 486  Q
    |||| ||| |||||| ||||||| ||| |||||||||||||| |||| || ||||||||||||||||||||||  ||| ||||||||||||||    
T  28201725 aagtgaattatcaaagcaattaaagactactaaccatacattcactaatggagggttataggaaggtggaagataaaggatggacatccacta 28201817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 27417327 - 27417390
Alignment:
Q  279 tgttatgaaattgatccttagcattgcaagatatta-ttataaagtatataagaatagagagaa 341  Q
    |||||||||||||||| ||||||||||||| |||||  || |||||||||||||||||||||||    
T  27417327 tgttatgaaattgatcattagcattgcaagctattacgtacaaagtatataagaatagagagaa 27417390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 466
Target Start/End: Complemental strand, 29530191 - 29530120
Alignment:
Q  395 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 466  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||  || || ||| ||||| ||||||||    
T  29530191 aagtgaatgatcaaaccaattaaggaccactaaccatgcatttactgatggggtttacaggaaagtggaaga 29530120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 405 - 483
Target Start/End: Complemental strand, 32808859 - 32808782
Alignment:
Q  405 tcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatcca 483  Q
    ||||| |||||||||||||||||||||| ||| |||| || |||||||||||||||||||||  ||| ||||| |||||    
T  32808859 tcaaatcaattaaggaccactaaccatatattcactaatg-gggttataggaaggtggaagattaaggatggaaatcca 32808782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 36686908 - 36686843
Alignment:
Q  273 ataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 341  Q
    ||||||||||||||||||||| ||||  |||||||||||   ||||||||||||||| |||||||||||    
T  36686908 ataacgtgttatgaaattgattcttaatattgcaagata---ttataaagtatataaaaatagagagaa 36686843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 487
Target Start/End: Original strand, 11444112 - 11444204
Alignment:
Q  395 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaa 487  Q
    |||| ||||||||||   |||||| |||| ||| |||||||| |||| | | ||||||||||||||||||||  ||| |||||||||||||||    
T  11444112 aagtgaatgatcaaagtcattaagaaccattaagcatacattcactaataatggttataggaaggtggaagattaaggatggacatccactaa 11444204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 289
Target Start/End: Complemental strand, 26023756 - 26023656
Alignment:
Q  190 atacgtacaagcatacaacacaataagttctatcataaaaaacaagaattagtattacctca-aattggtagagcttcgtgccgataacgtgttatgaaa 288  Q
    |||||||||| |||||| |||| |||||  |||||| |||||||| |||  ||||||||||| | ||| |||||||| |||| |||||||||||| ||||    
T  26023756 atacgtacaaacatacatcacattaagtaatatcatgaaaaacaaaaatcggtattacctcagatttgatagagcttagtgctgataacgtgttaagaaa 26023657  T
Q  289 t 289  Q
    |    
T  26023656 t 26023656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 400 - 461
Target Start/End: Original strand, 18643285 - 18643346
Alignment:
Q  400 aatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtg 461  Q
    |||||||||| |||||||||||||||||||||||| | |||| || || |||||| ||||||    
T  18643285 aatgatcaaagcaattaaggaccactaaccatacagtcactaatggggattatagaaaggtg 18643346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 388
Target Start/End: Original strand, 11444036 - 11444084
Alignment:
Q  340 aagagtgtattgtattacttcacaagtgtgttatttacattacaatata 388  Q
    |||||| |||||||||||||||||||||||| ||| |||||| ||||||    
T  11444036 aagagtatattgtattacttcacaagtgtgtaattcacattataatata 11444084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 341
Target Start/End: Original strand, 11443954 - 11444016
Alignment:
Q  276 acgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 341  Q
    |||| ||||||||||||| |||||||||| || |||||   ||||||||||||| |||||||||||    
T  11443954 acgtattatgaaattgattcttagcattgtaatatatt---ataaagtatataataatagagagaa 11444016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 382
Target Start/End: Original strand, 18643228 - 18643263
Alignment:
Q  347 tattgtattacttcacaagtgtgttatttacattac 382  Q
    ||||||||||||||||||||||||| ||||||||||    
T  18643228 tattgtattacttcacaagtgtgttctttacattac 18643263  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 11441667 - 11441716
Alignment:
Q  340 aagagtgtattgtattacttcacaagtgtgttatttacattacaatatag 389  Q
    |||| ||||||||||||| ||| |||||||| ||| ||||||||||||||    
T  11441667 aagaatgtattgtattacctcataagtgtgtaattcacattacaatatag 11441716  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 336
Target Start/End: Original strand, 18643116 - 18643196
Alignment:
Q  253 attggtagagcttcgtgccgataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaataga 336  Q
    |||||||||||||| ||| |||||| ||||||||||||||| |  |  ||| |||||   |||| |||||||||||||||||||    
T  18643116 attggtagagcttcatgctgataacatgttatgaaattgattcaaaatattacaaga---tattgtaaagtatataagaataga 18643196  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 11441588 - 11441647
Alignment:
Q  279 tgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 341  Q
    |||| ||||||||||  ||||||||||||||   |||||| |||||||||| |||||||||||    
T  11441588 tgttgtgaaattgatttttagcattgcaaga---tattatgaagtatataataatagagagaa 11441647  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 15553026 - 15552979
Alignment:
Q  347 tattgtattacttcacaagtgtgttatttacattacaatatagatccta 395  Q
    |||||||||||||||||||||||| | ||||||| |||||||| |||||    
T  15553026 tattgtattacttcacaagtgtgtca-ttacattgcaatataggtccta 15552979  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 341
Target Start/End: Original strand, 12753587 - 12753664
Alignment:
Q  261 agcttcgtgccgataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 341  Q
    |||||||||| ||||||||||||||||||| ||||  |||||||| |||   |||| ||||||||||||||||||||||||    
T  12753587 agcttcgtgctgataacgtgttatgaaattaatccagagcattgctaga---tattgtaaagtatataagaatagagagaa 12753664  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 341
Target Start/End: Complemental strand, 17350090 - 17350010
Alignment:
Q  258 tagagcttcgtgccgataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 341  Q
    ||||||||||||| |||||||||||||||||||||||   || |||||||||   |||| |||||||||||||| |||||||||    
T  17350090 tagagcttcgtgctgataacgtgttatgaaattgatcaaaagtattgcaaga---tattgtaaagtatataagagtagagagaa 17350010  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 394 - 466
Target Start/End: Complemental strand, 26654533 - 26654461
Alignment:
Q  394 taagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 466  Q
    ||||| ||| |||||| |||||||||||||||||||||||||| || |  || ||||||||||||||||||||    
T  26654533 taagtgaataatcaaagcaattaaggaccactaaccatacattcaccaacgatggttataggaaggtggaaga 26654461  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 28874370 - 28874334
Alignment:
Q  279 tgttatgaaattgatccttagcattgcaagatattat 315  Q
    |||||||||||||||||||| ||||||||||||||||    
T  28874370 tgttatgaaattgatccttaacattgcaagatattat 28874334  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 487
Target Start/End: Complemental strand, 5350967 - 5350929
Alignment:
Q  449 ttataggaaggtggaagaccaagaatggacatccactaa 487  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  5350967 ttataggaaggtggaagactaaggatggacatccactaa 5350929  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 484
Target Start/End: Original strand, 18902153 - 18902234
Alignment:
Q  403 gatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccac 484  Q
    ||||||| ||||||||||||| ||| ||| |||| |||| ||  ||||||||||||||| ||||  ||| ||| ||||||||    
T  18902153 gatcaaaacaattaaggaccattaagcatccattcactaatggaggttataggaaggtgaaagattaaggatgaacatccac 18902234  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 51700361 - 51700446
Alignment:
Q  400 aatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccact 485  Q
    ||||||||||  ||||||| |||  ||| |||||||| |||| |||| ||||||| ||||| |||||  ||| |||||||||||||    
T  51700361 aatgatcaaaataattaagaaccgataatcatacattcactaatgagagttatagaaaggtagaagattaaggatggacatccact 51700446  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 507
Target Start/End: Original strand, 56341873 - 56341983
Alignment:
Q  395 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaacttataa 494  Q
    |||| |||||| ||| |||||||  |||||||||||| || | |||| | | | ||||||||||||||||||| ||  ||| |||||||| || |||||     
T  56341873 aagtgaatgatgaaaacaattaaccaccactaaccatccactcactaataaagattataggaaggtggaagactaaagatgaacatccaccaaattata- 56341971  T
Q  495 ttattcataacat 507  Q
     ||||||||||||    
T  56341972 -tattcataacat 56341983  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 466
Target Start/End: Complemental strand, 7895185 - 7895117
Alignment:
Q  398 taaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 466  Q
    |||||| |||||  ||||||||||||||||||||| ||| |||| ||| |||| ||| || ||||||||    
T  7895185 taaatgttcaaaataattaaggaccactaaccatatattcactaatgaaggttgtagaaaagtggaaga 7895117  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 395 - 487
Target Start/End: Original strand, 12746623 - 12746715
Alignment:
Q  395 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaa 487  Q
    |||| ||||||||||   ||||||||||| |||  ||||||| |||| |   ||||||||||||||||||||   || |||||||||||||||    
T  12746623 aagtgaatgatcaaagtcattaaggaccattaagtatacattcactaatagtggttataggaaggtggaagattgaggatggacatccactaa 12746715  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 46694139 - 46694174
Alignment:
Q  279 tgttatgaaattgatccttagcattgcaagatattat 315  Q
    ||||||||||||||||||||||| |||||||||||||    
T  46694139 tgttatgaaattgatccttagca-tgcaagatattat 46694174  T

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Target: scaffold0066 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 11853 - 11794
Alignment:
Q  279 tgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 341  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||| | ||||||    
T  11853 tgttatgaaattgatccttagcattgcaagata---ttataaagtatataagaacaaagagaa 11794  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 487
Target Start/End: Complemental strand, 7578628 - 7578536
Alignment:
Q  395 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaa 487  Q
    |||| ||||||||||  |||||||||||||| ||||| |||| |||  || |  |||| |||||||||||||| ||| |||||||||||||||    
T  7578628 aagtgaatgatcaaagtaattaaggaccactgaccatccattcacttatgggacttatgggaaggtggaagactaaggatggacatccactaa 7578536  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 487
Target Start/End: Original strand, 35339066 - 35339141
Alignment:
Q  412 aattaaggaccactaaccatacatttactactgagggttataggaaggtggaagaccaagaatggacatccactaa 487  Q
    |||||||||||| ||||||| |||| |||  || | |||||||||||||||||||| ||  |||||||||||||||    
T  35339066 aattaaggaccattaaccatccattcacttatgggagttataggaaggtggaagactaatgatggacatccactaa 35339141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 42940025 - 42939966
Alignment:
Q  279 tgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 341  Q
    |||||||||||| ||||  |||||||||||||||| |   |||||||||||||||||||||||    
T  42940025 tgttatgaaattaatccaaagcattgcaagatattgt---aaagtatataagaatagagagaa 42939966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 466
Target Start/End: Complemental strand, 42129599 - 42129528
Alignment:
Q  395 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaaga 466  Q
    |||| ||||||||||  ||||||||| || |||||||| ||| |||| |  |||||||||||||||||||||    
T  42129599 aagtgaatgatcaaagaaattaaggatcattaaccatatattcactaataggggttataggaaggtggaaga 42129528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 487
Target Start/End: Original strand, 14719460 - 14719501
Alignment:
Q  446 gggttataggaaggtggaagaccaagaatggacatccactaa 487  Q
    |||||||||||||||||||||| ||| | |||||||||||||    
T  14719460 gggttataggaaggtggaagactaaggacggacatccactaa 14719501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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