View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19342_low_6 (Length: 457)
Name: NF19342_low_6
Description: NF19342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19342_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 30112613 - 30112193
Alignment:
| Q |
16 |
atacacttaagttttttatcaagggaatgttatagacttatagtattagacgacaataaatgaatgtatcacatcccttgaaaagcaaaaaagaacgtat |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30112613 |
atacacttaagttttttatcaagggaatgttatagacttatagtattagacgacaataaatgaatgtatcacatcccttgaaaagcaaaaaagaacgtat |
30112514 |
T |
|
| Q |
116 |
cacaatcatttgttgttttctacatgatatgtgttttccgcctaactcttgaattttcatggtacgtagttttttctacattgatctcaactggtaacat |
215 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30112513 |
cacaaccatttgttgttttctacatgatatgtgttttccgcccaactcttgaattttcatggtacgtagttttttctacattgatctcaactggtaacat |
30112414 |
T |
|
| Q |
216 |
gcataattaatgctagtggtaatgagaccaatccctattgtcaccatcagataatgtatgaagcatatgatgaatttttgtatatttttatcgactgtcg |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30112413 |
gcataattaatgctagtggtaatgagaccaatccctattgtcaccatcagataatgtatgaagcat---atgaatttttgtatatttttatcgactgtcg |
30112317 |
T |
|
| Q |
316 |
agtgtgtatgtaccctgcaacttaaggtgaggtcagcttcatcctatgtgatttacatttatgttgcaagacaacaaaaataaataagaaaagagattgg |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30112316 |
agtgtgtatgtaccctgcaacttaaggtgaggtcagcttcatcctatgtgatttacatttatgttgcaagacaac-aaaataaataagaaaagagattgg |
30112218 |
T |
|
| Q |
416 |
gcaaagcatggaaatatatctaatt |
440 |
Q |
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||||||||||||||||||||||||| |
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| T |
30112217 |
gcaaagcatggaaatatatctaatt |
30112193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 30153266 - 30152846
Alignment:
| Q |
16 |
atacacttaagttttttatcaagggaatgttatagacttatagtattagacgacaataaatgaatgtatcacatcccttgaaaagcaaaaaagaacgtat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30153266 |
atacacttaagttttttatcaagggaatgttatagacttatagtattagacgacaataaatgaatgtatcacatcccttgaaaagcaaaaaagaacgtat |
30153167 |
T |
|
| Q |
116 |
cacaatcatttgttgttttctacatgatatgtgttttccgcctaactcttgaattttcatggtacgtagttttttctacattgatctcaactggtaacat |
215 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30153166 |
cacaaccatttgttgttttctacatgatatgtgttttccgcccaactcttgaattttcatggtacgtagttttttctacattgatctcaactggtaacat |
30153067 |
T |
|
| Q |
216 |
gcataattaatgctagtggtaatgagaccaatccctattgtcaccatcagataatgtatgaagcatatgatgaatttttgtatatttttatcgactgtcg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30153066 |
gcataattaatgctagtggtaatgagaccaatccctattgtcaccatcagataatgtatgaagcat---atgaatttttgtatatttttatcgactgtcg |
30152970 |
T |
|
| Q |
316 |
agtgtgtatgtaccctgcaacttaaggtgaggtcagcttcatcctatgtgatttacatttatgttgcaagacaacaaaaataaataagaaaagagattgg |
415 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30152969 |
agtgtgtatgtaccctgcaacttaaggtgaggtcagcttcatcctatgtgatttacatttatgttgcaagacaac-aaaataaataagaaaagagattgg |
30152871 |
T |
|
| Q |
416 |
gcaaagcatggaaatatatctaatt |
440 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
30152870 |
gcaaagcatggaaatatatctaatt |
30152846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 30156611 - 30156487
Alignment:
| Q |
16 |
atacacttaagttttttatcaagggaatgttatagacttatagtattagacgacaataaatgaatgtatcacatcccttgaaaagcaaaaaagaacgtat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30156611 |
atacacttaagttttttatcaagggaatgttatagacttatagtattagacgacaataaatgaatgtatcacatcccttgaaaagcaaaaaagaacgtat |
30156512 |
T |
|
| Q |
116 |
cacaatcatttgttgttttctacat |
140 |
Q |
| |
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||||| ||||||||||||||||||| |
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| T |
30156511 |
cacaaccatttgttgttttctacat |
30156487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 342 - 434
Target Start/End: Complemental strand, 30150249 - 30150158
Alignment:
| Q |
342 |
gtgaggtcagcttcatcctatgtgatttacatttatgttgcaagacaacaaaaataaataagaaaagagattgggcaaagcatggaaatatat |
434 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30150249 |
gtgaggtcagcttcatcctatgtgatttacatttatgttgcaagacaac-aaaataaataagaaaagagattgggcaaagcatggaaatatat |
30150158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 192 - 263
Target Start/End: Complemental strand, 30150498 - 30150427
Alignment:
| Q |
192 |
tacattgatctcaactggtaacatgcataattaatgctagtggtaatgagaccaatccctattgtcaccatc |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30150498 |
tacattgatctcaactggtaacatgcataattaatgcttgtggtaatgagaccaatccctattgtcaccatc |
30150427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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