View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19343_low_1 (Length: 1116)
Name: NF19343_low_1
Description: NF19343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19343_low_1 |
 | |
|
| [»] scaffold0479 (2 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 415; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 239 - 807
Target Start/End: Original strand, 31151926 - 31152492
Alignment:
| Q |
239 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
338 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
31151926 |
tgttgggaaatgcctgcataatttccctcctctctgaactcaaaataggcactttagcggaaacataaaatgacacacaacaaaattttaatgtggaaaa |
31152025 |
T |
|
| Q |
339 |
ccttctcaatgtgagtaaggaaaa-accacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac |
437 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31152026 |
ccttctcaatgtgagtaagaaaaaaaccacgggatccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcagatggac |
31152125 |
T |
|
| Q |
438 |
ctaactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaact |
537 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31152126 |
ctaactacgtatctaaatttatagatacaactctcacaaattggcttactatatttttctctcacactcttacgaggaactctctatttttctctcaact |
31152225 |
T |
|
| Q |
538 |
ctatgtgagtgaggattatgttgtggtgtggtatgctttgctgaagctcttctctatttatagagagatttgaaccacaagcattgaatgcttggttctc |
637 |
Q |
| |
|
| || || | || |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31152226 |
cccgaggattgtg--ttgtgttgtggtgtgat-tgctttgctgaagctcttctctatttatagagagatttgaaccacaaacattgaatgcttggttctc |
31152322 |
T |
|
| Q |
638 |
acattcaaccactatactccaccgtccttgacttttgtactaccatttgccatgctttcaaattgcttctgacacaaattgaagttaagcaccacaagct |
737 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31152323 |
acattcaaccactatactcaaccgtccttgacttttgaactaccatctgccgtgctttcaaattgcttctgacacaaattgaagttaagcaccgcaagct |
31152422 |
T |
|
| Q |
738 |
actttctataggcatgtaggagaagaaatttcaacatttctcatagtgccttactatggctggaacccat |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
31152423 |
actttctataggcatgtaggagaagaaatttcaacatctctcatagtgccttactatagctggaacccat |
31152492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 885 - 1101
Target Start/End: Original strand, 22981841 - 22982057
Alignment:
| Q |
885 |
caaaactctattttctcttttgatagagcttttgtcatcatatctgctccattgtcattggtgtgaattttctctatttgcagcagtttattctctaaca |
984 |
Q |
| |
|
|||||||| || || ||||||| ||||| |||||||||||| ||||||||||| ||||||||||||| |||||||| || || || |||| |||| |||| |
|
|
| T |
22981841 |
caaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattggtgtgaactttctctactttcaacaatttactctccaaca |
22981940 |
T |
|
| Q |
985 |
catcacgtatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagag |
1084 |
Q |
| |
|
||||| || || || |||||||| || |||||||| || || || ||||||||||| ||||||||||| ||||| ||||| ||||| || |||||||| |
|
|
| T |
22981941 |
catcattaatacagtggtacctcacgtcaatgtgtttcgatctagagtggtatgtcgagttcttgctgagatgaatcgcactctgactgtcgcaatagag |
22982040 |
T |
|
| Q |
1085 |
aacataactttcttgat |
1101 |
Q |
| |
|
|||||| |||| ||||| |
|
|
| T |
22982041 |
aacatagcttttttgat |
22982057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 885 - 1101
Target Start/End: Complemental strand, 23806567 - 23806351
Alignment:
| Q |
885 |
caaaactctattttctcttttgatagagcttttgtcatcatatctgctccattgtcattggtgtgaattttctctatttgcagcagtttattctctaaca |
984 |
Q |
| |
|
|||||||| || || ||||||| ||||| |||||||||||| ||||||||||| ||||||||||||| |||||||| || || || |||| |||| |||| |
|
|
| T |
23806567 |
caaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattggtgtgaactttctctactttcaacaatttactctccaaca |
23806468 |
T |
|
| Q |
985 |
catcacgtatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagag |
1084 |
Q |
| |
|
||||| || || || |||||||| || |||||||| || || || ||||||||||| ||||||||||| ||||| ||||| ||||| || |||||||| |
|
|
| T |
23806467 |
catcattaatacagtggtacctcacgtcaatgtgtttcgatctagagtggtatgtcgagttcttgctgagatgaatcgcactctgactgtcgcaatagag |
23806368 |
T |
|
| Q |
1085 |
aacataactttcttgat |
1101 |
Q |
| |
|
|||||| |||| ||||| |
|
|
| T |
23806367 |
aacatagcttttttgat |
23806351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 239 - 436
Target Start/End: Complemental strand, 22981710 - 22981504
Alignment:
| Q |
239 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgt--aaaatgac-------acacaacaaaattttag |
329 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||| | ||||| | |||||||| |
|
|
| T |
22981710 |
tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcact--agcggaaacgtgaaaaataagcgtaatgacacag-agaattttag |
22981614 |
T |
|
| Q |
330 |
cgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc |
426 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
22981613 |
cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcacc |
22981514 |
T |
|
| Q |
427 |
ctcaggtgga |
436 |
Q |
| |
|
|| ||||||| |
|
|
| T |
22981513 |
cttaggtgga |
22981504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 239 - 436
Target Start/End: Original strand, 23806698 - 23806904
Alignment:
| Q |
239 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgt--aaaatgac-------acacaacaaaattttag |
329 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||| | ||||| | |||||||| |
|
|
| T |
23806698 |
tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcact--agcggaaacgtgaaaaataagcgtaatgacacag-agaattttag |
23806794 |
T |
|
| Q |
330 |
cgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc |
426 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
23806795 |
cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcacc |
23806894 |
T |
|
| Q |
427 |
ctcaggtgga |
436 |
Q |
| |
|
|| ||||||| |
|
|
| T |
23806895 |
cttaggtgga |
23806904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 315 - 498
Target Start/End: Original strand, 1111378 - 1111564
Alignment:
| Q |
315 |
acaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatct-ccactataataataatgggaat |
413 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||| | |||||||||| || ||||| | |||| ||||||||||| | | |||||||||||| |||| |
|
|
| T |
1111378 |
acaacaaaattttagtgtagaaaaccttctgaatgtaaataaggaaaaatcatgggactcataagtctcttaaatctactataataataataatgagaat |
1111477 |
T |
|
| Q |
414 |
acaaatcttcaccctcaggtggacctaactatgtatctcaatttg--tagatacaactctcacaaattggctcactatatttttctc |
498 |
Q |
| |
|
||||| |||||||| | || ||||||||||||||||||||||| |||||| | ||||||||||||| || |||||||||||| |
|
|
| T |
1111478 |
acaaactttcacccttacgtaaacctaactatgtatctcaatttgtatagatatatttctcacaaattggttccttatatttttctc |
1111564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 950 - 1039
Target Start/End: Original strand, 1105112 - 1105201
Alignment:
| Q |
950 |
aattttctctatttgcagcagtttattctctaacacatcacgtatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgt |
1039 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||| |||| ||||||| || |||| |||||||||||| ||| |||||||||| |
|
|
| T |
1105112 |
aattttctctatttaaagcagtttattctctaacacgtcatgtattcaatgatttcttacattgatgtgttttgatcttaaatggtatgt |
1105201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 239 - 636
Target Start/End: Complemental strand, 33808213 - 33807820
Alignment:
| Q |
239 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
338 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33808213 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa |
33808116 |
T |
|
| Q |
339 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33808115 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
33808016 |
T |
|
| Q |
439 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33808015 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
33807916 |
T |
|
| Q |
539 |
tatgtgagtgaggattatgttgtggtgtggtatgctttgctgaagctcttctctatttatagagagatttgaaccacaagcattgaatgcttggttct |
636 |
Q |
| |
|
|||||||||||||||| |||||||||||| | | |||||||| ||||||||||||||||||| | |||||||| ||||| ||||||||||||| |
|
|
| T |
33807915 |
tatgtgagtgaggattgtgttgtggtgtg--tttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttct |
33807820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 239 - 636
Target Start/End: Complemental strand, 33811867 - 33811474
Alignment:
| Q |
239 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
338 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33811867 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa |
33811770 |
T |
|
| Q |
339 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811769 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
33811670 |
T |
|
| Q |
439 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811669 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
33811570 |
T |
|
| Q |
539 |
tatgtgagtgaggattatgttgtggtgtggtatgctttgctgaagctcttctctatttatagagagatttgaaccacaagcattgaatgcttggttct |
636 |
Q |
| |
|
|||||||||||||||| |||||||||||| | | |||||||| ||||||||||||||||||| | |||||||| ||||| ||||||||||||| |
|
|
| T |
33811569 |
tatgtgagtgaggattgtgttgtggtgtg--tttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttct |
33811474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 239 - 636
Target Start/End: Complemental strand, 33816785 - 33816392
Alignment:
| Q |
239 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
338 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33816785 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa |
33816688 |
T |
|
| Q |
339 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816687 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
33816588 |
T |
|
| Q |
439 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816587 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
33816488 |
T |
|
| Q |
539 |
tatgtgagtgaggattatgttgtggtgtggtatgctttgctgaagctcttctctatttatagagagatttgaaccacaagcattgaatgcttggttct |
636 |
Q |
| |
|
|||||||||||||||| |||||||||||| | | |||||||| ||||||||||||||||||| | |||||||| ||||| ||||||||||||| |
|
|
| T |
33816487 |
tatgtgagtgaggattgtgttgtggtgtg--tttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttct |
33816392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 794 - 1101
Target Start/End: Complemental strand, 33811307 - 33811001
Alignment:
| Q |
794 |
tggctggaacccatcaattctccccctccagccaaagaggaaactatccttagattagtttggggttgctgctatgcctgcagcctctttacaaaactct |
893 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| | ||||||||||||| |
|
|
| T |
33811307 |
tggctggaaaccaacaattctccccctccagccaaag-ggaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactct |
33811209 |
T |
|
| Q |
894 |
attttctcttttgatagagcttttgtcatcatatctgctccattgtcattggtgtgaattttctctatttgcagcagtttattctctaacacatcacgta |
993 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
33811208 |
atcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaa |
33811109 |
T |
|
| Q |
994 |
tccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataact |
1093 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33811108 |
tccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataaat |
33811009 |
T |
|
| Q |
1094 |
ttcttgat |
1101 |
Q |
| |
|
|||||||| |
|
|
| T |
33811008 |
ttcttgat |
33811001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 794 - 1101
Target Start/End: Complemental strand, 33816225 - 33815919
Alignment:
| Q |
794 |
tggctggaacccatcaattctccccctccagccaaagaggaaactatccttagattagtttggggttgctgctatgcctgcagcctctttacaaaactct |
893 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| | ||||||||||||| |
|
|
| T |
33816225 |
tggctggaaaccaacaattctccccctccagccaaag-ggaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactct |
33816127 |
T |
|
| Q |
894 |
attttctcttttgatagagcttttgtcatcatatctgctccattgtcattggtgtgaattttctctatttgcagcagtttattctctaacacatcacgta |
993 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
33816126 |
atcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaa |
33816027 |
T |
|
| Q |
994 |
tccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataact |
1093 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33816026 |
tccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataaat |
33815927 |
T |
|
| Q |
1094 |
ttcttgat |
1101 |
Q |
| |
|
|||||||| |
|
|
| T |
33815926 |
ttcttgat |
33815919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 417
Target Start/End: Complemental strand, 16698601 - 16698504
Alignment:
| Q |
322 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
417 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| || ||||||| | ||||||| | ||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
16698601 |
aattttagtgtggaaatccttctcaatgtgagaaagggaaaaattatgggacccttggacctcttaaaacttccactataatgataatgggaatacaa |
16698504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 417
Target Start/End: Original strand, 22763905 - 22764002
Alignment:
| Q |
322 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
417 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| || ||||||||||||||||| | |||||||||| | | ||||||| ||||||||||||||| |
|
|
| T |
22763905 |
aattttagcatggaaaaccttctcaatatgagaaagggaaaaaccacgggaccattgggcctcttaaaacttatgctataatgataatgggaatacaa |
22764002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 239 - 645
Target Start/End: Complemental strand, 50603403 - 50602993
Alignment:
| Q |
239 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
338 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
50603403 |
tgttgggaaatgccagtacaatttctctcctccgtgaactcaaaatagacactttagcgaaaacgtaaaatgacacacaataaaattttagcgtggaaaa |
50603304 |
T |
|
| Q |
339 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
438 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| |
|
|
| T |
50603303 |
ccttctcaatgtgagtaagaaaaaaccacggaacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcacctttagatggacc |
50603204 |
T |
|
| Q |
439 |
taactatgtatctcaatttgtagatacaactctc--acaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaac |
536 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50603203 |
taactatatatctcaatttgtagatacaactctcatacaaattggctcactatatttttctct--cactcttatgaggaactttctatttttctctcaac |
50603106 |
T |
|
| Q |
537 |
tctatgtgagtgaggat-----tatgttgtggtgtggtatgctttgctgaagctcttctctatttatagagagatttgaaccacaagcattgaatgcttg |
631 |
Q |
| |
|
||| ||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||| |
|
|
| T |
50603105 |
tctgtgtgagtgaggattgtgctatgttgtggtgt-gtttgctttgctgaagctcttctctatttatagagagaaatgaaccgtaagcattaaatgcttg |
50603007 |
T |
|
| Q |
632 |
gttctcacattcaa |
645 |
Q |
| |
|
|||| ||| ||||| |
|
|
| T |
50603006 |
gttcacactttcaa |
50602993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 846 - 1100
Target Start/End: Original strand, 54967873 - 54968127
Alignment:
| Q |
846 |
gattagtttggggttgctgctatgcctgcagcctctttacaaaactctattttctcttttgatagagcttttgtcatcatatctgctccattgtcattgg |
945 |
Q |
| |
|
||||| |||||||||||||| | || ||||| | ||| ||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
54967873 |
gattaatttggggttgctgccaatccagcagcttgtttgcaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttctcattgg |
54967972 |
T |
|
| Q |
946 |
tgtgaattttctctatttgcagcagtttattctctaacacatcacgtatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaatt |
1045 |
Q |
| |
|
|||||| |||||||| || || || |||| | || ||||||||||| ||||| |||||||||||||| ||||||||||| || || |||||||| || || |
|
|
| T |
54967973 |
tgtgaactttctctactttcaacaatttactttccaacacatcacgaatccagtgatacctcacatcaatgtgttttgatctggagtggtatgttgagtt |
54968072 |
T |
|
| Q |
1046 |
cttgctgaggtgaattgcactttgactatcacaatagagaacataactttcttga |
1100 |
Q |
| |
|
||||||||| |||||||| || ||||| || |||||||||||||||||||||||| |
|
|
| T |
54968073 |
cttgctgagatgaattgcgctctgactgtcgcaatagagaacataactttcttga |
54968127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 238 - 489
Target Start/End: Original strand, 54967209 - 54967477
Alignment:
| Q |
238 |
atgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt |
326 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |||||| || | ||||| |
|
|
| T |
54967209 |
atgttgggaaatgcctgcataatttccctcctccgtcaactcaaaataggcact--agcggaaacgtgaaataaaagcgtaatgacaca-aagagaattt |
54967305 |
T |
|
| Q |
327 |
tagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctctt--aaatctccactataataataatgggaatacaa-atctt |
422 |
Q |
| |
|
|||||||||||||||||||||| |||| || |||||||||||||||||| | ||||||| ||| ||||||||||| ||||||||||||||| | ||| |
|
|
| T |
54967306 |
tagcgtggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaactt |
54967405 |
T |
|
| Q |
423 |
caccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
489 |
Q |
| |
|
|||||| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
54967406 |
cacccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
54967477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 237 - 436
Target Start/End: Original strand, 44782522 - 44782733
Alignment:
| Q |
237 |
tatgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatt |
325 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||| || | |||| |
|
|
| T |
44782522 |
tatgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatt |
44782618 |
T |
|
| Q |
326 |
ttagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atct |
421 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| |||||||||||||||| | ||||||||| | ||||||||||| ||||||||||||||| | || |
|
|
| T |
44782619 |
ttagcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaact |
44782718 |
T |
|
| Q |
422 |
tcaccctcaggtgga |
436 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
44782719 |
tcacccttaggtgga |
44782733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 322 - 489
Target Start/End: Complemental strand, 39298908 - 39298736
Alignment:
| Q |
322 |
aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa-atc |
420 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| ||||||||| |||||||||| | |||||||||| ||||||||||| |||| |||||||||| | | |
|
|
| T |
39298908 |
aattttagtgtgaaaaaccttctcaatgtgatgaaggaaaaatcacgggacccttgtgcctcttaaacttccactataatgataaagggaatacaacaac |
39298809 |
T |
|
| Q |
421 |
ttcaccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
489 |
Q |
| |
|
|||||||| ||||||| ||||| ||| | |||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
39298808 |
ttcacccttaggtggatctaactacaatatatctctcaatttgtaaggac-actctcacaaattggctcactat |
39298736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 320 - 436
Target Start/End: Original strand, 18556392 - 18556511
Alignment:
| Q |
320 |
aaaattttagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
417 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||| ||||||||||| | |||| |||||||| |
|
|
| T |
18556392 |
aaaattttagcgtggaaaaccttctcaatctgagaaaggcaaaaaaccacgggaccctcgagcctcttaaacttccactataatgacaatgagaatacaa |
18556491 |
T |
|
| Q |
418 |
-atcttcaccctcaggtgga |
436 |
Q |
| |
|
| ||||||||| ||||||| |
|
|
| T |
18556492 |
caacttcacccttaggtgga |
18556511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 391 - 495
Target Start/End: Original strand, 31725346 - 31725448
Alignment:
| Q |
391 |
tccactataataataatgggaatacaaatcttcaccctcaggtggacctaactatgtatctcaatttgtagatacaactctcacaaattggctcactata |
490 |
Q |
| |
|
|||| ||||| ||||||| |||||||||||||||| || |||||||||| || |||||||||||||||||| |||| |||||||||||| | |||||| |
|
|
| T |
31725346 |
tccaatataacaataatgagaatacaaatcttcacacttaggtggaccttacgatgtatctcaatttgtag--acaattctcacaaattgattaactata |
31725443 |
T |
|
| Q |
491 |
ttttt |
495 |
Q |
| |
|
||||| |
|
|
| T |
31725444 |
ttttt |
31725448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 251 - 436
Target Start/End: Original strand, 54979854 - 54980051
Alignment:
| Q |
251 |
cctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattttagcgtggaaaac |
339 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||| |||| |||||| || | ||||||||| |||||||| |
|
|
| T |
54979854 |
cctgcataatttccctcctccgtcaactcaaaataagcact--agcggaaacgtgaaataaaagtgtaatgacaca-aagagaattttagcatggaaaac |
54979950 |
T |
|
| Q |
340 |
cttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctctt--aaatctccactataataataatgggaatacaa-atcttcaccctcaggtgg |
435 |
Q |
| |
|
||||||||| |||| || |||||||||||||||||| | ||||||| ||| ||||||||||| ||||||||||||||| | ||||||||| |||||| |
|
|
| T |
54979951 |
cttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacccttaggtgg |
54980050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 318 - 417
Target Start/End: Complemental strand, 17645897 - 17645800
Alignment:
| Q |
318 |
acaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | || |||||||||||||| | | ||| ||||||| ||||||||||| |||||| ||||||| |
|
|
| T |
17645897 |
acaaaattttagcgtggaaaaccttctcaatataa--aaaaaaaaaccacgggactcttgagcgtcttaaacttccactataatgataatgacaatacaa |
17645800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 17645981 - 17645928
Alignment:
| Q |
239 |
tgttgggaaatg-cctgcttaatttccctcctccgtgaactcaaaataggcact |
291 |
Q |
| |
|
|||||||||||| ||| | ||||||||||| |||||||||||||||||| |||| |
|
|
| T |
17645981 |
tgttgggaaatgacctccataatttccctcatccgtgaactcaaaatagacact |
17645928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 793 - 1101
Target Start/End: Original strand, 4836159 - 4836462
Alignment:
| Q |
793 |
atggctggaacccatcaattctccccctccagccaaagaggaaactatccttagattagtttggggttgctgctatgcctgcagcctctttacaaaactc |
892 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||| || |||| ||||| ||||||||||||||||| | || || ||||| | ||| |||||||| |
|
|
| T |
4836159 |
atggctggacccca-caattctccccctccagccataggggaatg---cctta-attagtttggggttgctaccattccagcagcttgtttgcaaaactc |
4836253 |
T |
|
| Q |
893 |
tattttctcttttgatagagcttttgtcatcatatctgctccattgtcattggtgtgaattttctctatttgcagcagtttattctctaacacatcacgt |
992 |
Q |
| |
|
||| |||||||| | ||| | |||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4836254 |
tatcttctctttcggtagcggttttgtcatcatgtctgctccattctcatttgtgtgaattttctctatttgcagcagtttattctctaacacatcacgt |
4836353 |
T |
|
| Q |
993 |
atccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataac |
1092 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4836354 |
atccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataac |
4836453 |
T |
|
| Q |
1093 |
tttcttgat |
1101 |
Q |
| |
|
||||||||| |
|
|
| T |
4836454 |
tttcttgat |
4836462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 846 - 1024
Target Start/End: Original strand, 24379927 - 24380105
Alignment:
| Q |
846 |
gattagtttggggttgctgctatgcctgcagcctctttacaaaactctattttctcttttgatagagcttttgtcatcatatctgctccattgtcattgg |
945 |
Q |
| |
|
|||||||||||||||||||| | || ||||| | ||| ||||||||||| |||||||||||||||| |||||||||||| || |||||||| | ||||| |
|
|
| T |
24379927 |
gattagtttggggttgctgccaatccagcagcttgtttgcaaaactctatcttctcttttgatagaggttttgtcatcatgtcggctccattcttattgg |
24380026 |
T |
|
| Q |
946 |
tgtgaattttctctatttgcagcagtttattctctaacacatcacgtatccaatgatacctcacatcgatgtgttttga |
1024 |
Q |
| |
|
|||||| |||||||| || || || |||| |||| ||||||||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
24380027 |
tgtgaactttctctactttcaacaatttactctccaacacatcacgaatccagtgatacctcacatcattgtgttttga |
24380105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 239 - 436
Target Start/End: Original strand, 4842648 - 4842857
Alignment:
| Q |
239 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaatttt |
327 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| || | |||||| |
|
|
| T |
4842648 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataagtgtaatgacaca-aagagaatttt |
4842744 |
T |
|
| Q |
328 |
agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
423 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||| |||||| | |||||||||| | ||||||||||| ||||| ||||||||| | |||| |
|
|
| T |
4842745 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacaggacccttgggcctcttaaaacttccactataatgataataggaatacaacaacttc |
4842844 |
T |
|
| Q |
424 |
accctcaggtgga |
436 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
4842845 |
acccttaggtgga |
4842857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 238 - 489
Target Start/End: Original strand, 25857130 - 25857395
Alignment:
| Q |
238 |
atgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt |
326 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||| |||| |||||| | ||||| |
|
|
| T |
25857130 |
atgttgggaaatgcctgcataatttccctcctccgtgaacttaaaataggcact--agcggaaacgtgaaatataagcgtaatgacacagag---aattt |
25857224 |
T |
|
| Q |
327 |
tagcgtggaaaaccttctcaatgtgag-taaggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
423 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
25857225 |
tagcgtggaaaaccttctcaatgtgagaaaaggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
25857324 |
T |
|
| Q |
424 |
accctcaggtggacctaact---atgtatctc--aatttgtagatacaactctcacaaattggctcactat |
489 |
Q |
| |
|
||| | ||||||| || ||| || |||||| |||||||| | ||||||||||||||||||||||| |
|
|
| T |
25857325 |
acctttaggtggatctcactacaatatatctcttaatttgtaaggaacactctcacaaattggctcactat |
25857395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 239 - 489
Target Start/End: Original strand, 4835575 - 4835840
Alignment:
| Q |
239 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatg-acac------aca-acaaaattttagc |
330 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||| || |||||||| |||| | || ||| | | ||||||||| |
|
|
| T |
4835575 |
tgttgggaaatgcctgcataatttccctcctccatgaactcaaaataggcact--agtggaaacgtgaaatataaacgtaatgacacagagaattttagc |
4835672 |
T |
|
| Q |
331 |
gtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc |
426 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||| | ||||||||||| ||||||||||| ||| | ||||||| |
|
|
| T |
4835673 |
gtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcacc |
4835772 |
T |
|
| Q |
427 |
ctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
489 |
Q |
| |
|
|| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
4835773 |
cttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
4835840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 320 - 436
Target Start/End: Original strand, 13465046 - 13465165
Alignment:
| Q |
320 |
aaaattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||| |||||| | |||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
13465046 |
aaaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacaggacccttgggcctcttaaaacatccactataatgataatgggaatacaa |
13465145 |
T |
|
| Q |
418 |
-atcttcaccctcaggtgga |
436 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
13465146 |
caagttcaccctcaggtgga |
13465165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 330 - 499
Target Start/End: Original strand, 8252686 - 8252853
Alignment:
| Q |
330 |
cgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctc |
429 |
Q |
| |
|
|||||||||||||||||| |||||||||| | |||||| |||||| ||||||| || || | ||||||||| ||||||||||| ||||| | | |
|
|
| T |
8252686 |
cgtggaaaaccttctcaacgtgagtaaggta------cgggactcgtaagtctcttaactcctcaatgtaataataacgggaatacaaagcttcatcttt |
8252779 |
T |
|
| Q |
430 |
aggtggacctaacta----tgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctct |
499 |
Q |
| |
|
|| ||||| ||| || ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||| |
|
|
| T |
8252780 |
agatggacttaattaattatgtatctcaatttgtagatacaactatcataaattgactcactatatttttctct |
8252853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 322 - 417
Target Start/End: Original strand, 27341025 - 27341120
Alignment:
| Q |
322 |
aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
417 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||| | ||||||||| || |||| ||| ||||||| ||||||| |
|
|
| T |
27341025 |
aattttagcgtggaaaaccttctcaatgtaagaaaggaaaaaccacgggacccttgtacctcttaaacttctactacaatgataatggaaatacaa |
27341120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 313 - 434
Target Start/End: Complemental strand, 17845969 - 17845847
Alignment:
| Q |
313 |
acacaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaa |
412 |
Q |
| |
|
|||||| | |||||||| ||||||||||||| ||||||||| ||||||||||||| ||||| | ||||||||| ||||||||||| ||||||| || |
|
|
| T |
17845969 |
acacaagagaattttagagtggaaaaccttcccaatgtgaggaaggaaaaaccacaggacctttggacctcttaaacttccactataatgataatggaaa |
17845870 |
T |
|
| Q |
413 |
tacaa-atcttcaccctcaggtg |
434 |
Q |
| |
|
||||| | ||||||||| ||||| |
|
|
| T |
17845869 |
tacaacaacttcacccttaggtg |
17845847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 322 - 436
Target Start/End: Original strand, 24379370 - 24379487
Alignment:
| Q |
322 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-a |
418 |
Q |
| |
|
||||||| |||||||||||||||||||||||| || ||||||||||||||| | | |||||||||| | ||||||||||| ||||| ||||||||| | |
|
|
| T |
24379370 |
aattttaacgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggatctttgggcctcttaaaacttccactataatgataataggaatacaaca |
24379469 |
T |
|
| Q |
419 |
tcttcaccctcaggtgga |
436 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
24379470 |
acttcacccttaggtgga |
24379487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 24380163 - 24380113
Alignment:
| Q |
239 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggca |
289 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
24380163 |
tgttgggaaatgcctgcataatttccctcctctgtgaactcaaaataggca |
24380113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 38994151 - 38994218
Alignment:
| Q |
322 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaa |
388 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
38994151 |
aattttaacgtggaaaaccttctcaatgcgagaaagggaaaaaccacgggaccctcgagcctcttaaa |
38994218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 29240892 - 29241120
Alignment:
| Q |
16 |
atcaatttggccttccctgttcatgcttttgcatattttgtgttacaaccaatgcagaaatccg-----aagtgcctctttatccagcaatttagggcaa |
110 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29240892 |
atcaatttggccttccctgttcatacttttgcatattttgtgttacaaccaatgcagaaatccgggtttaagtgcctctttatccagcaatttagggcaa |
29240991 |
T |
|
| Q |
111 |
gctagcgagccaaattcagaggaggaagcagacggcaaacgaagaagagatgggtggggttctaataaaaaagtgatttcgtagctgctccaaagactca |
210 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29240992 |
gctagcgagcctaattcagaggaggaagcagacgacaaacgaagaagagatgggtggggttctaataaaaaagtgatttcgtagctgatccaaagactca |
29241091 |
T |
|
| Q |
211 |
tcctgtcagttctaaatgtagacgaatat |
239 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
29241092 |
tcctgtcagttctaaacgtagacgaatat |
29241120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 16828439 - 16828651
Alignment:
| Q |
17 |
tcaatttggccttccctgttcatgcttttgcatattttgtgttacaaccaatgcagaaatccg-----aagtgcctctttatccagcaatttagggcaag |
111 |
Q |
| |
|
||||| ||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |
|
|
| T |
16828439 |
tcaatctggccttccttgttcatacttatgcatattttgtgttacaaccaatgcagaaatccgggtttaagtgcctctttatccagcaaatcagggcaag |
16828538 |
T |
|
| Q |
112 |
ctagcgagccaaattcagaggaggaagcagacggcaaacgaagaagagatgggtggggttctaat-aaaaaagtgatttcgtagctgctccaaagactca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| || | | || |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||| |
|
|
| T |
16828539 |
ctagcgagccaaattcagaggaggaagcggaagaccaaagaagaagagatgggtggggttctaataaaaaaagtgatttctcagctgctccaaaggctca |
16828638 |
T |
|
| Q |
211 |
tcctgtcagttct |
223 |
Q |
| |
|
||||||||||||| |
|
|
| T |
16828639 |
tcctgtcagttct |
16828651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 239 - 489
Target Start/End: Complemental strand, 41481815 - 41481548
Alignment:
| Q |
239 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
327 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
41481815 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt |
41481719 |
T |
|
| Q |
328 |
agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
423 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
41481718 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
41481619 |
T |
|
| Q |
424 |
accctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
489 |
Q |
| |
|
||||| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
41481618 |
acccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
41481548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 236 - 489
Target Start/End: Complemental strand, 36167816 - 36167547
Alignment:
| Q |
236 |
atatgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaat |
324 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| || | ||| |
|
|
| T |
36167816 |
atatgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataaacgtaatgacaca-aagagaat |
36167720 |
T |
|
| Q |
325 |
tttagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atc |
420 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| ||||||||| |||||| | |||||||||| | ||||||||||| ||||||||||||||| | | |
|
|
| T |
36167719 |
tttagcgtggaaaaccttctcaatatgagaaagggaaaaaaccac-ggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaac |
36167621 |
T |
|
| Q |
421 |
ttcaccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
489 |
Q |
| |
|
|||||||| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
36167620 |
ttcacccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
36167547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 244 - 433
Target Start/End: Original strand, 18951129 - 18951326
Alignment:
| Q |
244 |
ggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat------gacacacaacaaaattttagcgtggaaa |
337 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| | |||| | | ||| ||||||||| |||||| |
|
|
| T |
18951129 |
ggaaatgcctgcataatttgcctcctccgtgaactcaaaataggcact--agcggaaacatgaaatataagcgtaatgacacagaattttagcatggaaa |
18951226 |
T |
|
| Q |
338 |
accttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcaccctcaggt |
433 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| |||| | || ||||||| | ||||||||||| ||||||||||||||| | ||||||||| |||| |
|
|
| T |
18951227 |
accttctcaatgtgagaaagggaaaaaaccacgagacctttgggcttcttaaaacttccactataatgataatgggaatacaacaacttcacccttaggt |
18951326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 8e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 8e-61
Query Start/End: Original strand, 239 - 454
Target Start/End: Original strand, 29706854 - 29707069
Alignment:
| Q |
239 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
338 |
Q |
| |
|
|||||| |||||||| | ||||||| ||| |||||||||| |||||| |||||||||| ||| ||||||||||||||||||||||||||| | |||||| |
|
|
| T |
29706854 |
tgttggaaaatgcctccataatttctctcatccgtgaacttaaaatatgcactttagcaaaaatgtaaaatgacacacaacaaaattttagtgaggaaaa |
29706953 |
T |
|
| Q |
339 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
438 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||| | || |||||||||||||||||||||||||||||| | | |||||||||||||| |||||||| |
|
|
| T |
29706954 |
ccttctcaatatgagtaaggaacaatcacgggactcatagacctcttaaatctccactataataataatggaataaaaaatcttcaccctcgggtggacc |
29707053 |
T |
|
| Q |
439 |
taactatgtatctcaa |
454 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
29707054 |
taactatgtatctcaa |
29707069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 414
Target Start/End: Complemental strand, 27642225 - 27642132
Alignment:
| Q |
322 |
aattttagcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaata |
414 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| |||| ||||| |||||| || | |||||||| |||||||||||||||||||||||| |
|
|
| T |
27642225 |
aattttggcgtgtaaaaccttctcaatgtgagaaaggaaaaaatcacggggtcctcgggtctcttaaacttccactataataataatgggaata |
27642132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 108; Significance: 1e-53; HSPs: 2)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 846 - 1101
Target Start/End: Complemental strand, 2274 - 2019
Alignment:
| Q |
846 |
gattagtttggggttgctgctatgcctgcagcctctttacaaaactctattttctcttttgatagagcttttgtcatcatatctgctccattgtcattgg |
945 |
Q |
| |
|
|||||||||||||||||||| | || ||||| | ||| |||||||| || |||||||||| ||||| ||| |||||||| ||||||||||| ||||||| |
|
|
| T |
2274 |
gattagtttggggttgctgccaatccagcagcttgtttgcaaaactcaatcttctcttttggtagaggtttggtcatcatgtctgctccattctcattgg |
2175 |
T |
|
| Q |
946 |
tgtgaattttctctatttgcagcagtttattctctaacacatcacgtatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaatt |
1045 |
Q |
| |
|
|||||| |||||||| || || || |||| |||| ||||||||||| ||||| |||||||||||||| || |||||||| || || || ||||| || || |
|
|
| T |
2174 |
tgtgaactttctctactttcaacaatttactctccaacacatcacgaatccagtgatacctcacatcaatatgttttgatctggagtgatatgttgagtt |
2075 |
T |
|
| Q |
1046 |
cttgctgaggtgaattgcactttgactatcacaatagagaacataactttcttgat |
1101 |
Q |
| |
|
||||||||| ||||| || |||||||| || |||||||||||||| |||||||||| |
|
|
| T |
2074 |
cttgctgagatgaatcgcgctttgactgtcgcaatagagaacatagctttcttgat |
2019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 238 - 436
Target Start/End: Complemental strand, 2937 - 2727
Alignment:
| Q |
238 |
atgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt |
326 |
Q |
| |
|
|||||||||||||| ||| |||||||||| ||||||||||||||||||| |||| ||||||||||| |||| |||||| || | ||||| |
|
|
| T |
2937 |
atgttgggaaatgcatgcataatttcccttctccgtgaactcaaaatagacact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaattt |
2841 |
T |
|
| Q |
327 |
tagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atctt |
422 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| | ||| |
|
|
| T |
2840 |
tagcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaactt |
2741 |
T |
|
| Q |
423 |
caccctcaggtgga |
436 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
2740 |
cacccttaggtgga |
2727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 257 - 489
Target Start/End: Original strand, 26516 - 26752
Alignment:
| Q |
257 |
taatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaaccttctcaatgtgagtaa |
356 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||||||||| ||||||||||| |||| ||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
26516 |
taatctccctccttcgtgaactcaaaatagacactttagcgaaaacgtaaaataacac--aacaaaattttagggtggaaaaccttttcaatgtgagtaa |
26613 |
T |
|
| Q |
357 |
ggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaat-cttcaccctcaggtggacctaacta-----tgtatc |
450 |
Q |
| |
|
|||||||| ||||||||| | |||||||||| |||||| |||| |||| | |||||||| | || |||||| ||||||| || |||| | | || |
|
|
| T |
26614 |
ggaaaaactacgggacccttgggcctcttaaacttccactctaatgataacgagaatacaactactccacccttaggtggatctcactacaatttatctc |
26713 |
T |
|
| Q |
451 |
tcaatttgtagatacaactctcacaaattggctcactat |
489 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| |
|
|
| T |
26714 |
tcaatttgtaaggaacactctcacaaattggctcactat |
26752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 2e-30; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 239 - 489
Target Start/End: Original strand, 9757212 - 9757480
Alignment:
| Q |
239 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
327 |
Q |
| |
|
|||||| |||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
9757212 |
tgttggtaaatgcctgcataatttccttcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaatttt |
9757308 |
T |
|
| Q |
328 |
agcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaagcctcttaaatc---tccactataataataatgggaatacaa-atctt |
422 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||| ||||||||||| ||||||||||||||| | ||| |
|
|
| T |
9757309 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaaaacttccactataatgataatgggaatacaacaactt |
9757408 |
T |
|
| Q |
423 |
caccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
489 |
Q |
| |
|
|||||| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
9757409 |
cacccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
9757480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 320 - 417
Target Start/End: Original strand, 37286972 - 37287069
Alignment:
| Q |
320 |
aaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
417 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
37286972 |
aaaattttagcatggaaaaccttctcaatgtgaaaaaggaaaaatcacgggacccttaagcatcttaaacttccactataataataataagaatacaa |
37287069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 903 - 1101
Target Start/End: Original strand, 25003544 - 25003727
Alignment:
| Q |
903 |
tttgatagagcttttgtcatcatatctgctccattgtcattggtgtgaattttctctatttgcagcagtttattctctaacacatcacgtatccaatgat |
1002 |
Q |
| |
|
|||| ||||| |||||||||||||| || || ||||||| ||||| |||||||| ||||||| ||| | |||||||||||||||| | | |
|
|
| T |
25003544 |
tttggtagagtttttgtcatcatatttgtccctttgtcatcggtgt---ttttctctttttgcagtagtct-ttctctaacacatcacat---------t |
25003630 |
T |
|
| Q |
1003 |
acctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataactttcttgat |
1101 |
Q |
| |
|
|||||||||| |||||||| |||||||| || |||||||| || || ||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
25003631 |
acctcacatctatgtgttt-gaccttgattg-tatgtcgagttatttctgaggtgaattgcactttgactatcacaatagggaacataactttgttgat |
25003727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 322 - 434
Target Start/End: Original strand, 42682924 - 42683038
Alignment:
| Q |
322 |
aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-at |
419 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||| |||||||||| | ||||||||| | ||||||||||| ||||||||||||||| | |
|
|
| T |
42682924 |
aatttcagcgtggaaaaccttctcaatgtgagaaaggaaaaatcacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaa |
42683023 |
T |
|
| Q |
420 |
cttcaccctcaggtg |
434 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
42683024 |
cttcacccttaggtg |
42683038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 324 - 417
Target Start/End: Complemental strand, 37038035 - 37037942
Alignment:
| Q |
324 |
ttttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
417 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| |||||||||||||| | |||||||||| | |||||||| |||||| |||||||| |
|
|
| T |
37038035 |
ttttagcgaggaaaaccttctcaatgtgagaaaggagaaaccacgggacccttgggcctcttaaactttcactataacgataatgagaatacaa |
37037942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 37038108 - 37038074
Alignment:
| Q |
257 |
taatttccctcctccgtgaactcaaaataggcact |
291 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37038108 |
taatttctctcctccgtgaactcaaaataggcact |
37038074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 417
Target Start/End: Original strand, 342217 - 342404
Alignment:
| Q |
239 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat---------gacacacaacaaaattttag |
329 |
Q |
| |
|
|||||| |||||||||| |||||| ||||||||||||||||||||||||||| |||| ||||||| |||| |||||| | |||||||| |
|
|
| T |
342217 |
tgttggaaaatgcctgcataattttcctcctccgtgaactcaaaataggcac--tagcagaaacgtgaaatataagcgtaatgacacaa-agaattttag |
342313 |
T |
|
| Q |
330 |
cgtggaaaaccttctcaatgtgagtaa-ggaa-aaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
417 |
Q |
| |
|
|||| |||||||||||||| |||| || |||| ||||||||||| || | |||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
342314 |
cgtgaaaaaccttctcaatatgagaaatggaagaaaccacgggatccttgggcctcttaaaacttccactataatgataatgggaatacaa |
342404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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