View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19343_low_2 (Length: 494)
Name: NF19343_low_2
Description: NF19343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19343_low_2 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 33966989 - 33966496
Alignment:
| Q |
1 |
caaaatctgaccacaatacattgtcatacaaaaggaattcgaccgatacgttccgctcgaaacggtttatcaacctacaatacaacaagagcagacttag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33966989 |
caaaatctgaccacaatacattgtcatacaaaaggaattcgaccgatacgttctgctcgaaacggtttatcaacctacaatacaacaagagcagacttag |
33966890 |
T |
|
| Q |
101 |
cagaacaacaattcacgaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttgca |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33966889 |
cagaacaacaattcatgaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttgca |
33966790 |
T |
|
| Q |
201 |
cgttgataagaatccttcttttggagattttgatacaattcaagatgccattgattctcttccttccatcaatcttgttagagttgtcatcaaggttcat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33966789 |
cgttgataagaatccttcttttggagattttgatacaattcaaaatgccattgattctcttccttccatcaatcttgttagagttgtcatcaaggttcat |
33966690 |
T |
|
| Q |
301 |
gcaggagtttacacgtgagtagtactatactttatctcattttcctttgtttgtggtgtgattgtgtccaaagtttttaatttgcggtcacgtcggaatt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33966689 |
gcaggagtttacacgtgagtagtactatactttatctcattttcctttgtttgtggtgtcattgtgtccaaagtttttaatttgcggtcacgtcggaatt |
33966590 |
T |
|
| Q |
401 |
cttgatattgcgaaaaattgtgataaaatatgtatgttaaggtaatcaattgattggacttgagtagtagataagcttcgatggaagacatatt |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
33966589 |
cttgatattgcgaaaaattgtgataaaatatgtatgttaaggtaatcaattgattggactcgagtagtagataagcttggatggaagacatatt |
33966496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 101 - 321
Target Start/End: Original strand, 43076689 - 43076909
Alignment:
| Q |
101 |
cagaacaacaattcacgaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttgca |
200 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| | | | || ||||||||||| ||| |||||||||||||| | |
|
|
| T |
43076689 |
cagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctttagaacagccaaaaataagctttttccttcttatactttgaa |
43076788 |
T |
|
| Q |
201 |
cgttgataagaatccttcttttgga-gattttgatacaattcaagatgccattgattctcttccttccatcaatcttgttagagttgtcatcaaggttca |
299 |
Q |
| |
|
|||| |||| || | | ||| |||||| || ||||||||| ||||||||||| ||||| | ||| ||| | || ||||||||||| |||||||| |
|
|
| T |
43076789 |
cgtttataaacattcaagtaaaggaggattttcat-caattcaagcagccattgattcccttcccttcattaatttagtgagagttgtcattaaggttca |
43076887 |
T |
|
| Q |
300 |
tgcaggagtttacacgtgagta |
321 |
Q |
| |
|
|||||| |||||||||| |||| |
|
|
| T |
43076888 |
tgcaggggtttacacgtaagta |
43076909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University