View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19344_high_6 (Length: 247)
Name: NF19344_high_6
Description: NF19344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19344_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 38249623 - 38249854
Alignment:
| Q |
1 |
tgagagtacgagcattgggattgaaggagaaagatcctaatgttagagggtttatggttatgaacggtgatcttttaatttttgctacagaagaaaaggt |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38249623 |
tgagagtaagagcattgggattgaaggagaaagatcctaatgttagagggtttatggttatgaacggtgatcttttaatttttgctacagaagaaaaggt |
38249722 |
T |
|
| Q |
101 |
ttacagttgcggtttggactgtgaacgatatatgatggtggaggaaatttgccaacatagttgtggtttttaccctcgctttatctcctactcagatact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38249723 |
ttacagttgcggtttggactgtgaacgatatatgatggtggaggaaatttgccaacatagttgtggtttttaccctcgctttatctcctactcagatact |
38249822 |
T |
|
| Q |
201 |
cttcgtctgtgtcggactaatgctgaagttat |
232 |
Q |
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| T |
38249823 |
cttcgtttgtgtcggactaatgctgaagttat |
38249854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 38254740 - 38254945
Alignment:
| Q |
1 |
tgagagtacgagcattgggattgaaggagaaagatcctaatgttagagggtttatggttatgaacggtgatcttttaatttttgctacagaagaaaaggt |
100 |
Q |
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|||| ||| |||||||||||||||| |||| | |||| ||||||||| ||||||||||||||| ||| ||| ||| | ||||| || ||| | || | |
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| T |
38254740 |
tgagggtaagagcattgggattgaatgagacaaatcccaatgttagaaagtttatggttatgaatggtagtctcttagtctttgcaacggaacagaaact |
38254839 |
T |
|
| Q |
101 |
ttacagttgcggtttggactgtgaacgatatatgatggtggaggaaatttgccaacatagttgtggtttttaccctcgctttatctcctactcagatact |
200 |
Q |
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| T |
38254840 |
ttatagttatggtttggagggtgaaagttatatgatgctcgaagaaatatgtggacacaattatgcatttaaccctcgttttatctcctactctgataca |
38254939 |
T |
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| Q |
201 |
cttcgt |
206 |
Q |
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|||||| |
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| T |
38254940 |
cttcgt |
38254945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 20655851 - 20655704
Alignment:
| Q |
1 |
tgagagtacgagcattgggattgaaggagaaagatcctaatgttagagggtttatggttatgaacggtgatcttttaatttttgctacagaagaaaaggt |
100 |
Q |
| |
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|||||||| |||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||| |||| ||| ||||| |||| |||| || | |
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| T |
20655851 |
tgagagtaagagcattgggattgaatgagacaaatcctaatgttagagggtttatggttatgaatggtaatctattagtttttcctacgaaagagaaact |
20655752 |
T |
|
| Q |
101 |
ttacagttgcggtttggactgtgaacgatatatgatggtggaggaaat |
148 |
Q |
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| T |
20655751 |
ttacggttatggtttggagggtgaaagttatatgatggtcgaagaaat |
20655704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 20657268 - 20657354
Alignment:
| Q |
1 |
tgagagtacgagcattgggattgaaggagaaagatcctaatgttagagggtttatggttatgaacggtgatcttttaatttttgcta |
87 |
Q |
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|||| ||| |||||||| ||||||| |||| | ||||||||||||||||||||||| ||||||| ||| |||| ||| ||||||||| |
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| T |
20657268 |
tgagggtaagagcattgagattgaatgagacaaatcctaatgttagagggtttatgtttatgaatggtaatctcttagtttttgcta |
20657354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 157
Target Start/End: Complemental strand, 12035742 - 12035623
Alignment:
| Q |
38 |
taatgttagagggtttatggttatgaacggtgatcttttaatttttgctacagaagaaaaggtttacagttgcggtttggactgtgaacgatatatgatg |
137 |
Q |
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||||||||||||||||||||||||||| || |||| || |||||||||| ||||| || ||||||| | |||||||| ||||| | ||||||||| |
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| T |
12035742 |
taatgttagagggtttatggttatgaatcgtaatctcttcgtttttgctacggaagagaaactttacagctatggtttggagggtgaaagttatatgatg |
12035643 |
T |
|
| Q |
138 |
gtggaggaaatttgccaaca |
157 |
Q |
| |
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|| || ||||| || ||||| |
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| T |
12035642 |
gtcgaagaaatgtgtcaaca |
12035623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 12037137 - 12037251
Alignment:
| Q |
34 |
atcctaatgttagagggtttatggttatgaacggtgatcttttaatttttgctacagaagaaaaggtttacagttgcggtttggactgtgaacgatatat |
133 |
Q |
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||||| ||||||||||||||||||||||||| ||| |||| ||| ||||||||| |||| || ||||||||| |||||| | ||||| | ||||| |
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| T |
12037137 |
atcctcatgttagagggtttatggttatgaatggtaatctattagtttttgctatgaaagagaaactttacagttatggtttgaagggtgaaagttatat |
12037236 |
T |
|
| Q |
134 |
gatggtggaggaaat |
148 |
Q |
| |
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|||||| || ||||| |
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| T |
12037237 |
gatggtcgaagaaat |
12037251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 22177687 - 22177834
Alignment:
| Q |
1 |
tgagagtacgagcattgggattgaaggagaaagatcctaatgttagagggtttatggttatgaacggtgatcttttaatttttgctacagaagaaaaggt |
100 |
Q |
| |
|
|||| ||| |||||||| ||||||| |||| | |||| ||||||||||||||||| |||||||| ||| |||| ||| | |||||||| ||||| || | |
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| T |
22177687 |
tgagggtaagagcattgagattgaatgagacaaatcccaatgttagagggtttattgttatgaatggtaatctcttagtctttgctacggaagagaaact |
22177786 |
T |
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| Q |
101 |
ttacagttgcggtttggactgtgaacgatatatgatggtggaggaaat |
148 |
Q |
| |
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||| |||| |||||||| ||||| | ||||||||||| || ||||| |
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| T |
22177787 |
ttatagttatggtttggagggtgaaagttatatgatggtcgaagaaat |
22177834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 22169412 - 22169499
Alignment:
| Q |
1 |
tgagagtacgagcattgggattgaaggagaaagatcctaatgttagagggtttatggttatgaacggtgatcttttaatttttgctac |
88 |
Q |
| |
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|||| ||| |||||||| |||||| |||| | |||| |||||||||||||||||||||||||| ||| |||| ||| | |||||||| |
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| T |
22169412 |
tgagggtaagagcattgaaattgaatgagacaaatcccaatgttagagggtttatggttatgaatggtaatctcttagtctttgctac |
22169499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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