View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19344_low_1 (Length: 429)
Name: NF19344_low_1
Description: NF19344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19344_low_1 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 153 - 429
Target Start/End: Original strand, 40683033 - 40683309
Alignment:
| Q |
153 |
taagcaaactgcacacaattcatgatcttgtacatgtaacatcttgcagaagaatcccagctgaggttgtaatattgtagacattttgcgaaataacaaa |
252 |
Q |
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| T |
40683033 |
taagcacactgcacacaattcatgatcttgtacatgtaacaccttgcagaagaatcccagctgaggttgtaatattgtagacattttgcgaaataacaaa |
40683132 |
T |
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| Q |
253 |
gctaagtgggtagcaaacaaccttcaaagttatccagttggattcatagatatctttcttaaactggatggaagtgaacaatttgagaccgaattcaacc |
352 |
Q |
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| T |
40683133 |
gctaagtgggtagcaaacaaccttcaaagttatccagttggattcaaagatatctttcttaaactggatggaagtgaacaatttgagaccgaattcaacc |
40683232 |
T |
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| Q |
353 |
cttccatgttcttggcggctacgataaatgttgttagtcacgtgaggctcacacgagtctaccttcagcttcttctc |
429 |
Q |
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| T |
40683233 |
cttccatgttctcggcggctacgataaatgttgttagtcacgtgaggctcacacgagtctaccttcagcttcatctc |
40683309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 40682896 - 40682993
Alignment:
| Q |
14 |
tgtaatataatacacacttaattaatattggaattacatcagattgttttccagagttgcaaaaactctcacacacatgatatgtacaaaaatcttga |
111 |
Q |
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| T |
40682896 |
tgtaatataatacacacttaattaatattggaattacatcagattgttttccagagttacaagaactctcacacacatgatatgtactaaaatcttga |
40682993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 226 - 363
Target Start/End: Original strand, 40672786 - 40672923
Alignment:
| Q |
226 |
attgtagacattttgcgaaataacaaagctaagtgggtagcaaacaaccttcaaagttatccagttggattcatagatatctttcttaaactggatggaa |
325 |
Q |
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| T |
40672786 |
attgtagacatttttcgaaattccaaagcttagtgggtagcaaacatacttcaaatgtttccgattggaaacaaagatataactcttgaacccgatggaa |
40672885 |
T |
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| Q |
326 |
gtgaacaatttgagaccgaattcaacccttccatgttc |
363 |
Q |
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| T |
40672886 |
gtgaacactttgagcccgaatgcaacccttccatgttc |
40672923 |
T |
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