View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19344_low_3 (Length: 299)
Name: NF19344_low_3
Description: NF19344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19344_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 204 - 287
Target Start/End: Original strand, 2296277 - 2296360
Alignment:
| Q |
204 |
cttgaaaaaagggtccacattaggttctggtttgaatataaatagatactttagcgtatcctaattttcatttatcactacttc |
287 |
Q |
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| T |
2296277 |
cttgaaaaaagggtccccattaggttctggtttgaatataaatagatactttagcgtatcctaattttcatttatcacaacttc |
2296360 |
T |
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Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 2296125 - 2296214
Alignment:
| Q |
52 |
aaatacaaaatactatacaaaaattagtgtatttaatttt-ttaaagttcaaaaagagtttatgttgactcaaaaaatatacatataatta |
141 |
Q |
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| T |
2296125 |
aaatacaaaatactatataaaaattagtgtattcaatttttttaaagttcaaaaagggtttatgttgactcaaaaattatac-tataatta |
2296214 |
T |
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