View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19344_low_4 (Length: 288)
Name: NF19344_low_4
Description: NF19344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19344_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 272
Target Start/End: Complemental strand, 34438317 - 34438062
Alignment:
| Q |
16 |
ataagagtaagaaaatatacttgcacaaaaggtgagatggcacttgtatcaacactatcagtctcactgaggcctgtatagtaaaattaaacacacatga |
115 |
Q |
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| T |
34438317 |
ataagagtaagaaaatatacttgcacaaaaggtgagatggcacttgtatcaacactatcagtctcactgaggcctgtatagtaaaattaaacacacatga |
34438218 |
T |
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| Q |
116 |
aaggacaaatttaacaatcactt-ttttaaaacaattgtagcnnnnnnnnnnntagtgataatgtaaaatataccgttgttgatgacccatacaggcgtg |
214 |
Q |
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| T |
34438217 |
aaggacaaatttaacaatcactttttttaaaacaattgtagc--aaaaacaaatagtgataatgtaaaatataccgttgttgatgacccatacaggcgtt |
34438120 |
T |
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| Q |
215 |
gcaccaatgtcctcagctagctgcagaagaaaaatagtgtatcaatattgaaatctac |
272 |
Q |
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| T |
34438119 |
gcaccaatgtcctcagctagctgcagaagaaaaatagtgtatcagtattgaaatctac |
34438062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 266
Target Start/End: Complemental strand, 34465304 - 34465218
Alignment:
| Q |
180 |
aaaatataccgttgttgatgacccatacaggcgtggcaccaatgtcctcagctagctgcagaagaaaaatagtgtatcaatattgaa |
266 |
Q |
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| T |
34465304 |
aaaatataccattgttgaagacccatattggcaatgcaccaatgtcctcagctaactgcacaagaaaaatagtgtttcaatattgaa |
34465218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 34465453 - 34465403
Alignment:
| Q |
18 |
aagagtaagaaaatatacttgcacaaaaggtgagatggcacttgtatcaac |
68 |
Q |
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| T |
34465453 |
aagagtaggaaaatatactttcacaaaaggtgagataacacttgtatcaac |
34465403 |
T |
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